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[172095_x_at]

Description C06E1.2 /REP_DB=WormBase Gene ID /WP=CE00057 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 6.4
(-3)
A 		37.3
(-0.6)
A 		47
(0.2)
P 		82.7
(3)
M 		76
B 28.6
(-0.9)
A 		32.6
(0.6)
P 		39
(3)
A 		23.2
(-3)
A 		16
C 43.6
(2.6)
A 		9.3
(-3)
A 		46
(3)
A 		46.3
(3)
A 		37
avr 26.2
(-3) 		26.4
(-3) 		44
(1.4) 		50.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 26.9
(-3)
A 		64.4
(-0.7)
A 		68.5
(-0.4)
P 		124.6
(3)
P 		54.8
(-1.3)
P 		27.4
(-3)
A 		98
B 34.7
(-3)
A 		78.1
(2.5)
P 		81.8
(3)
P 		50.8
(-0.9)
A 		56.8
(-0.2)
P 		69.5
(1.4)
A 		47
C 48.7
(-2.1)
P 		86.1
(1.8)
P 		98.1
(3)
P 		60.7
(-0.8)
P 		51.6
(-1.8)
P 		39.8
(-3)
A 		58
avr 36.8
(-3) 		76.2
(2.1) 		82.8
(3) 		78.7
(2.5) 		54.4
(-0.7) 		45.6
(-1.9) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.3
(-3)
A 		8.1
(0.5)
A 		12.3
(3)
P 		12.1
(2.9)
M 		10
B 9.1
(3)
A 		8.1
(1.6)
P 		9
(2.9)
A 		4.9
(-3)
A 		4
C 14.4
(2.3)
A 		2.7
(-3)
A 		16
(3)
A 		7.8
(-0.7)
A 		13
avr 8.6
(-0.7) 		6.3
(-3) 		12.4
(3) 		8.3
(-1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5
(-3)
A 		22.9
(1)
A 		14.9
(-0.8)
P 		31.6
(3)
P 		16.5
(-0.4)
P 		6.7
(-2.6)
A 		27
B 12.1
(-3)
A 		26
(3)
P 		19.9
(0.4)
P 		13.5
(-2.4)
A 		23.1
(1.7)
P 		25.9
(3)
A 		14
C 18
(-0.5)
P 		26.3
(3)
P 		25
(2.4)
P 		12.2
(-3)
P 		16.7
(-1.1)
P 		13.3
(-2.5)
A 		14
avr 11.7
(-3) 		25.1
(3) 		19.9
(0.7) 		19.1
(0.3) 		18.8
(0.2) 		15.3
(-1.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172095_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6820
Sequence Type Exemplar sequence
Representative Public ID C06E1.2 NCBI
Target Description C06E1.2 /REP_DB=WormBase Gene ID /WP=CE00057 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066489
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000034817 ENSEMBL cdna:SNAP chromosome:CEL140:III:8589823:8589975:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8589817-8589970(+) 100.0 100.0
chrIII:8589233-8590880(-) 90.85 90.85
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34297 Hypothetical protein C06E1.2 in chromosome III 8.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034817 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:172095_X_AT
gaacgttcattctgtattcattttcgctgttttggcaatttcatttgcttctggaatctt
ctttccaggtggaggaagcaagaagtgtggaggttatggtggtggttatggaagtggagt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTTCATTCTGTATTCATTTTC 677 345 15 Antisense
GTTCATTCTGTATTCATTTTCGCTG 215 445 19 Antisense
CTGTATTCATTTTCGCTGTTTTGGC 572 239 26 Antisense
CATTTTCGCTGTTTTGGCAATTTCA 440 215 33 Antisense
GTTTTGGCAATTTCATTTGCTTCTG 492 447 43 Antisense
TCATTTGCTTCTGGAATCTTCTTTC 676 619 55 Antisense
GGAATCTTCTTTCCAGGTGGAGGAA 131 533 67 Antisense
GGTGGAGGAAGCAAGAAGTGTGGAG 267 499 82 Antisense
AAGAAGTGTGGAGGTTATGGTGGTG 589 151 94 Antisense
GTGGAGGTTATGGTGGTGGTTATGG 213 489 101 Antisense
TGGTGGTGGTTATGGAAGTGGAGTC 643 551 111 Antisense
Sequence Source Affymetrix Proprietary Database