[Home] | [Total List]

[172094_x_at]

Description C30A5.9 /REP_DB=WormBase Gene ID /WP=CE00556 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 943
1 2 3 4 range
A 46.2
(-2.6)
A 		19.1
(-3)
A 		64.3
(-2.4)
A 		461.5
(3)
P 		442
B 61.5
(-1.1)
P 		7.3
(-3)
A 		12.5
(-2.8)
A 		181.8
(3)
P 		175
C 68.7
(-2.6)
A 		9.8
(-3)
A 		8.4
(-3)
A 		949.9
(3)
P 		942
avr 58.8
(-2.5) 		12.1
(-3) 		28.4
(-2.8) 		531.1
(3) 		519

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 10.3
(-3)
A 		31.9
(-1.7)
A 		113.1
(3)
P 		11.6
(-2.9)
A 		77.5
(0.9)
A 		11.1
(-3)
A 		103
B 90.5
(0.4)
M 		133.3
(3)
P 		103.6
(1.2)
P 		34
(-2.9)
A 		57.3
(-1.5)
A 		32.8
(-3)
A 		101
C 8.8
(-2.9)
A 		126.3
(3)
P 		6.2
(-3)
A 		49.9
(-0.8)
A 		6.5
(-3)
A 		29
(-1.9)
A 		120
avr 36.5
(-2) 		97.2
(3) 		74.3
(1.1) 		31.8
(-2.4) 		47.1
(-1.1) 		24.3
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 16.8
(-1.8)
A 		4.1
(-3)
A 		16.8
(-1.8)
A 		67.5
(3)
P 		63
B 19.6
(-0.1)
P 		1.8
(-3)
A 		2.9
(-2.8)
A 		38.7
(3)
P 		37
C 22.7
(-2.2)
A 		2.8
(-3)
A 		2.9
(-3)
A 		160.2
(3)
P 		157
avr 19.7
(-1.8) 		2.9
(-3) 		7.5
(-2.7) 		88.8
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 1.9
(-3)
A 		11.3
(-0.5)
A 		24.6
(3)
P 		2.9
(-2.7)
A 		23.4
(2.7)
A 		2.7
(-2.8)
A 		23
B 31.5
(0.8)
M 		44.4
(3)
P 		25.2
(-0.3)
P 		9
(-3)
A 		23.3
(-0.6)
A 		12.2
(-2.5)
A 		35
C 3.3
(-2.7)
A 		38.5
(3)
P 		1.6
(-3)
A 		10
(-1.6)
A 		2.1
(-2.9)
A 		9.7
(-1.7)
A 		37
avr 12.2
(-1.8) 		31.4
(3) 		17.1
(-0.6) 		7.3
(-3) 		16.3
(-0.8) 		8.2
(-2.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172094_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7888
Sequence Type Exemplar sequence
Representative Public ID C30A5.9 NCBI
Target Description C30A5.9 /REP_DB=WormBase Gene ID /WP=CE00556 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000019636 ENSEMBL cdna:SNAP chromosome:CEL140:III:8204344:8204544:-1 11/11 None
SNAP00000018757 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9621193:9621393:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062101 6/11 Cross Hyb Matching Probes A 
SNAP00000043192 8/11 Cross Hyb Matching Probes None
SNAP00000019584 1/11 Cross Hyb Matching Probes None
SNAP00000005296 5/11 Cross Hyb Matching Probes None
SNAP00000020871 8/11 Cross Hyb Matching Probes None
SNAP00000043039 8/11 Cross Hyb Matching Probes None
SNAP00000035310 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004305 2/11 Cross Hyb Matching Probes None
SNAP00000004295 3/11 Cross Hyb Matching Probes None
SNAP00000018213 8/11 Cross Hyb Matching Probes None
SNAP00000038805 7/11 Cross Hyb Matching Probes None
SNAP00000003444 1/11 Cross Hyb Matching Probes None
SNAP00000011770 4/11 Cross Hyb Matching Probes None
SNAP00000015306 8/11 Cross Hyb Matching Probes None
SNAP00000025712 4/11 Cross Hyb Matching Probes None
SNAP00000028259 7/11 Cross Hyb Matching Probes None
SNAP00000029607 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029610 4/11 Cross Hyb Matching Probes None
SNAP00000030645 8/11 Cross Hyb Matching Probes None
SNAP00000035370 7/11 Cross Hyb Matching Probes None
SNAP00000036224 3/11 Cross Hyb Matching Probes None
SNAP00000000364 3/11 Cross Hyb Matching Probes None
SNAP00000006132 6/11 Cross Hyb Matching Probes None
SNAP00000010104 8/11 Cross Hyb Matching Probes None
SNAP00000010908 4/11 Cross Hyb Matching Probes None
SNAP00000020532 6/11 Cross Hyb Matching Probes None
SNAP00000025481 7/11 Cross Hyb Matching Probes None
SNAP00000035600 6/11 Cross Hyb Matching Probes None
SNAP00000041586 3/11 Cross Hyb Matching Probes None
GENEFINDER00000016869 1/11 Cross Hyb Matching Probes None
SNAP00000034189 8/11 Cross Hyb Matching Probes None
SNAP00000007901 7/11 Cross Hyb Matching Probes None
GENEFINDER00000014116 2/11 Cross Hyb Matching Probes None
SNAP00000014110 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009497 1/11 Cross Hyb Matching Probes None
D1081.1 8/11 Cross Hyb Matching Probes None
F46F5.3 4/11 Cross Hyb Matching Probes None
F39E9.5 6/11 Cross Hyb Matching Probes A 
C17C3.14 5/11 Cross Hyb Matching Probes None
F49F1.13 5/11 Cross Hyb Matching Probes None
M03D4.5 4/11 Cross Hyb Matching Probes None
C17H12.7 8/11 Cross Hyb Matching Probes None
R13H7.3 4/11 Cross Hyb Matching Probes None
C52D10.4 8/11 Cross Hyb Matching Probes None
T27C4.5 3/11 Cross Hyb Matching Probes None
C18C4.4 6/11 Cross Hyb Matching Probes None
ZK682.1 2/11 Cross Hyb Matching Probes None
R04B5.2 6/11 Cross Hyb Matching Probes None
F14H8.3 6/11 Cross Hyb Matching Probes None
Y113G7A.7 1/11 Cross Hyb Matching Probes None
R04D3.11 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84499 Hypothetical protein C30A5.9 [Caenorhabditis elegans] sp|P34354|YK89_CAEEL Hypothetical protein C30A5.9 in chromosome III 2.0E-34
blast T15539 hypothetical protein C17C3.14 - Caenorhabditis elegans 2.0E-31
blast AAB70370 Hypothetical protein F39E9.5 [Caenorhabditis elegans] ref|NP_494502.1| F39E9.5 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:172094_X_AT
atgaccgagaatttgctcgccgaacgtcacgccctccgatgggtttttctgtacgagttc
ccccaaatctgcaattgcaacgaagctcgtcgtaacatgtgtgcagtgttaggcaagaac
tctgtcacctacaataccatgaagtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCGAGAATTTGCTCGCCGAAC 343 45 13 Antisense
CGAGAATTTGCTCGCCGAACGTCAC 180 251 18 Antisense
GCCCTCCGATGGGTTTTTCTGTACG 122 285 43 Antisense
TCCGATGGGTTTTTCTGTACGAGTT 545 595 47 Antisense
GTTCCCCCAAATCTGCAATTGCAAC 243 441 69 Antisense
TCTGCAATTGCAACGAAGCTCGTCG 237 609 80 Antisense
GAAGCTCGTCGTAACATGTGTGCAG 234 343 94 Antisense
GTGTGCAGTGTTAGGCAAGAACTCT 211 487 111 Antisense
GCAAGAACTCTGTCACCTACAATAC 81 321 125 Antisense
AACTCTGTCACCTACAATACCATGA 139 141 130 Antisense
GTCACCTACAATACCATGAAGTTTT 35 467 136 Antisense
Sequence Source Affymetrix Proprietary Database