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[172093_x_at]

Description Y54B9A.A /REP_DB=WormBase Gene ID /WP=CE24436 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 44      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 57      6grp_total > 45      4grp_total > 03      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18177
1 2 3 4 range
A 2675.9
(-2.5)
P 		1172
(-3)
P 		1187.5
(-3)
P 		18831.1
(3)
P 		17659
B 4118.3
(-0.6)
P 		1055.1
(-3)
P 		1162.2
(-2.9)
P 		8754.3
(3)
P 		7699
C 3250.6
(-2)
P 		838.6
(-2.9)
P 		654.1
(-3)
P 		16347.3
(3)
P 		15693
avr 3348.3
(-2) 		1021.9
(-3) 		1001.3
(-3) 		14644.2
(3) 		13643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6279
1 2 3 4 5 6 range
A 2050.7
(-1.7)
P 		1354.9
(-2.5)
P 		6215.8
(3)
P 		876.3
(-3)
P 		2950
(-0.7)
P 		2624.9
(-1)
P 		5340
B 2378
(0.3)
P 		2734.5
(1.6)
P 		2226.1
(-0.2)
P 		1813.8
(-1.7)
P 		1434.2
(-3)
P 		3133.7
(3)
P 		1700
C 724.2
(-2.7)
P 		6681.7
(3)
P 		963.8
(-2.5)
P 		2056.4
(-1.4)
P 		402.5
(-3)
P 		3137.7
(-0.4)
P 		6279
avr 1717.6
(-2.6) 		3590.4
(3) 		3135.2
(1.6) 		1582.2
(-3) 		1595.6
(-3) 		2965.4
(1.1) 		2008
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2529
1 2 3 4 range
A 974.3
(-1.3)
P 		254.4
(-3)
P 		310.4
(-2.9)
P 		2756.5
(3)
P 		2502
B 1313.3
(0.9)
P 		260.6
(-3)
P 		269.3
(-3)
P 		1865.5
(3)
P 		1605
C 1076
(-1)
P 		241.1
(-3)
P 		228
(-3)
P 		2756.4
(3)
P 		2528
avr 1121.2
(-0.6) 		252
(-3) 		269.2
(-3) 		2459.5
(3) 		2208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1909
1 2 3 4 5 6 range
A 378
(-2.2)
P 		481.9
(-1.6)
P 		1353.7
(3)
P 		222.3
(-3)
P 		890.2
(0.5)
P 		639.1
(-0.8)
P 		1131
B 827.4
(0)
P 		910.2
(0.7)
P 		540.6
(-2.5)
P 		480.4
(-3)
P 		582.7
(-2.1)
P 		1168.5
(3)
P 		688
C 268.4
(-2.6)
P 		2038.8
(3)
P 		245.3
(-2.6)
P 		413.5
(-2.1)
P 		130.2
(-3)
P 		1050.4
(-0.1)
P 		1909
avr 491.3
(-2.1) 		1143.6
(3) 		713.2
(-0.3) 		372.1
(-3) 		534.4
(-1.7) 		952.7
(1.5) 		772
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172093_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19400
Sequence Type Exemplar sequence
Representative Public ID Y54B9A.A NCBI
Target Description Y54B9A.A /REP_DB=WormBase Gene ID /WP=CE24436 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073039 NCBI Caenorhabditis elegans Y54B9A.1 (Y54B9A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000012659 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2244845:2245222:-1 9/11 None
GENEFINDER00000033792 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15766134:15766628:-1 9/11 None
GENEFINDER00000005827 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9431053:9442124:-1 11/11 None
Y54B9A.1 ENSEMBL cdna:known chromosome:CEL140:V:9441744:9442133:-1 gene:Y54B9A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 7/11 Cross Hyb Matching Probes A 
NM_075710 1/11 Cross Hyb Matching Probes None
NM_078408 2/11 Cross Hyb Matching Probes A 
NM_061393 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 6/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 8/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 8/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 5/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 5/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 6/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 7/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 5/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 6/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029502 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 5/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 5/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 2/11 Cross Hyb Matching Probes None
T02H6.3 5/11 Cross Hyb Matching Probes A 
Y116A8C.41 7/11 Cross Hyb Matching Probes A 
B0310.4 1/11 Cross Hyb Matching Probes None
C53C11.4 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y54B9A.1
Entrez Gene 190253 Entrez gene
SwissProt Q966A9 EMBL-EBI
WormBase CE24436 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81768 Hypothetical protein B0310.4 [Caenorhabditis elegans] ref|NP_508111.1| B0310.4 [Caenorhabditis elegans] sp|Q10940|YWS4_CAEEL Hypothetical protein B0310.4 in chromosome X 2.0E-57
blast T31576 hypothetical protein Y105C5A.s - Caenorhabditis elegans 4.0E-57
blast AAK68515 Hypothetical protein Y54B9A.1 [Caenorhabditis elegans] ref|NP_505440.1| Y54B9A.1 [Caenorhabditis elegans] 2.0E-51
blast AAK68515 Hypothetical protein Y54B9A.1 [Caenorhabditis elegans] ref|NP_505440.1| Y54B9A.1 [Caenorhabditis elegans] 1.0E-49
blast AAK68515 Hypothetical protein Y54B9A.1 [Caenorhabditis elegans] ref|NP_505440.1| Y54B9A.1 [Caenorhabditis elegans] 2.0E-37
blast AAB42309 Hypothetical protein C53C11.4 [Caenorhabditis elegans] ref|NP_510809.1| C53C11.4 [Caenorhabditis elegans] 3.0E-36
blast T31576 hypothetical protein Y105C5A.s - Caenorhabditis elegans 4.0E-33
blast AAB42309 Hypothetical protein C53C11.4 [Caenorhabditis elegans] ref|NP_510809.1| C53C11.4 [Caenorhabditis elegans] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.2E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.8E-5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.1E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.2E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.2E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-9
Sequence
Target Sequence 
>C. ELEGANS:172093_X_AT
ctgcgagatcttcgtggcgagacccatcgtggcgagacccgtcgtggcgagacccgtcgt
ggcgagacccatcgtggtgagacccatcgtggtgagacccatcgaggtgagacccatcgt
ggtgagacccatcgtggtgagacccatcgtggtgagacctatcgtggtgagacccatcgt
ggtgagacccatcgtggtgagacccaccgtggtaagaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCGAGATCTTCGTGGCGAGACCC 435 237 91 Antisense
ATCGTGGTGAGACCCATCGTGGTGA 460 35 161 Antisense
CCCATCGTGGTGAGACCCATCGAGG 161 259 173 Antisense
CCCATCGAGGTGAGACCCATCGTGG 159 259 188 Antisense
CCATCGTGGTGAGACCCATCGTGGT 129 271 204 Antisense
CATCGTGGTGAGACCCATCGTGGTG 105 213 220 Antisense
GACCCATCGTGGTGAGACCTATCGT 573 381 231 Antisense
GACCTATCGTGGTGAGACCCATCGT 574 381 246 Antisense
TGGTGAGACCCATCGTGGTGAGACC 545 551 255 Antisense
TGAGACCCATCGTGGTGAGACCCAC 532 565 273 Antisense
GTGAGACCCACCGTGGTAAGACCCA 655 479 287 Antisense
Sequence Source Affymetrix Proprietary Database