[Home] | [Total List]

[172091_x_at]

Description Y47G7A.B /REP_DB=WormBase Gene ID /WP=CE26542 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 61      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.4
(-3)
A 		4.4
(3)
A 		4.4
(3)
A 		3.8
(1.2)
A 		2
B 4.8
(3)
A 		3.7
(0.5)
A 		3.5
(0)
A 		2.2
(-3)
A 		3
C 3.1
(-2.5)
A 		11.3
(3)
A 		5.1
(-1.2)
A 		2.4
(-3)
A 		9
avr 3.4
(-2) 		6.5
(3) 		4.3
(-0.6) 		2.8
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.2
(0.4)
A 		4.2
(0.4)
A 		3
(-2.7)
A 		5.2
(3)
A 		2.9
(-3)
A 		3.2
(-2.2)
A 		2
B 3
(-1.8)
A 		3.3
(-1.5)
A 		8.6
(3)
A 		6.5
(1.2)
A 		3.6
(-1.3)
A 		1.6
(-3)
A 		7
C 2.7
(-2.2)
A 		3.8
(0.7)
A 		3.1
(-1.2)
A 		4.7
(3)
A 		2.7
(-2.2)
A 		2.4
(-3)
A 		2
avr 3.3
(-1.3) 		3.8
(-0.3) 		4.9
(1.8) 		5.5
(3) 		3.1
(-1.6) 		2.4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(0)
A 		1
(1)
A 		1.2
(3)
A 		0.6
(-3)
A 		1
B 1.5
(3)
A 		0.9
(-0.6)
A 		0.8
(-1.2)
A 		0.5
(-3)
A 		1
C 1
(-1.8)
A 		3.3
(3)
A 		1.8
(-0.1)
A 		0.4
(-3)
A 		3
avr 1.1
(0) 		1.7
(3) 		1.3
(1) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.8
(-1.7)
A 		1.5
(3)
A 		0.6
(-3)
A 		1.3
(1.7)
A 		0.9
(-1)
A 		0.8
(-1.7)
A 		1
B 1
(-1.4)
A 		1.1
(-1)
A 		2.1
(3)
A 		1.7
(1.4)
A 		1.5
(0.6)
A 		0.6
(-3)
A 		2
C 1
(0)
A 		1.2
(3)
A 		0.8
(-3)
A 		0.9
(-1.5)
A 		0.9
(-1.5)
A 		0.8
(-3)
A 		0
avr 0.9
(-1) 		1.3
(3) 		1.2
(2) 		1.3
(3) 		1.1
(1) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172091_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18894
Sequence Type Exemplar sequence
Representative Public ID Y47G7A.B NCBI
Target Description Y47G7A.B /REP_DB=WormBase Gene ID /WP=CE26542 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y47G7A.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y47G7A.B Y47G7A.B /REP_DB=WormBase Gene ID /WP=CE26542 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2741488-2741779(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172091_X_AT
cccaacaaccagtggcgggcggacattcctggacggccggcagtcggggacctgccgaca
cttccaggcgatcaaggcttcccagcagatggatccggaccaacagctccaggcggcccg
gcagtcggggacggaccgccactccaaggcggttcagcagctggctatggcccaacagtc
ccaggcggcccagaaacggcgggctgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAACAACCAGTGGCGGGCGGACA 389 199 19 Antisense
CAACAACCAGTGGCGGGCGGACATT 384 189 21 Antisense
CGATCAAGGCTTCCCAGCAGATGGA 19 247 87 Antisense
TTCCCAGCAGATGGATCCGGACCAA 705 683 97 Antisense
CCAGCAGATGGATCCGGACCAACAG 460 273 100 Antisense
GCAGATGGATCCGGACCAACAGCTC 205 311 103 Antisense
GACCGCCACTCCAAGGCGGTTCAGC 91 285 152 Antisense
CGCCACTCCAAGGCGGTTCAGCAGC 553 257 155 Antisense
CCAAGGCGGTTCAGCAGCTGGCTAT 452 275 162 Antisense
AAGGCGGTTCAGCAGCTGGCTATGG 319 161 164 Antisense
GCGGCCCAGAAACGGCGGGCTGGGC 579 289 203 Antisense
Sequence Source Affymetrix Proprietary Database