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[172090_at]

Description Y67D8B.D /REP_DB=WormBase Gene ID /WP=CE22770 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 64      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 35.5
(-2.1)
A 		52.7
(0.7)
A 		67
(3)
A 		29.6
(-3)
A 		37
B 7.8
(-3)
A 		32
(-0.5)
A 		65.2
(3)
A 		23.7
(-1.3)
A 		57
C 34.8
(-2)
A 		35.1
(-2)
A 		20.6
(-3)
A 		109.5
(3)
P 		89
avr 26
(-3) 		39.9
(-0.1) 		50.9
(2.3) 		54.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 51.8
(3)
A 		39.9
(1.5)
A 		47.8
(2.5)
A 		35.5
(0.9)
A 		5.1
(-3)
A 		48.6
(2.6)
A 		47
B 4.8
(-3)
A 		26.7
(-0.3)
A 		28.8
(-0)
A 		53.3
(3)
A 		10.2
(-2.3)
A 		32
(0.4)
A 		49
C 26.1
(-2.8)
A 		50.6
(0.8)
A 		66.2
(3)
A 		55.7
(1.5)
A 		24.6
(-3)
A 		45.1
(-0)
A 		42
avr 27.6
(-0.5) 		39.1
(1.4) 		47.6
(2.9) 		48.2
(3) 		13.3
(-3) 		41.9
(1.9) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.9
(0.9)
A 		11.4
(0.2)
A 		17.5
(3)
A 		4.3
(-3)
A 		13
B 2.5
(-3)
A 		7.9
(-0.4)
A 		15.1
(3)
A 		5.1
(-1.8)
A 		13
C 11.5
(-0.7)
A 		10.1
(-1.5)
A 		7.2
(-3)
A 		18.5
(3)
P 		11
avr 9
(-3) 		9.8
(-1.9) 		13.3
(3) 		9.3
(-2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.5
(0.8)
A 		14.2
(3)
A 		10.4
(1.2)
A 		9
(0.5)
A 		1.5
(-3)
A 		11.8
(1.9)
A 		13
B 1.7
(-3)
A 		8.9
(0.5)
A 		7
(-0.4)
A 		14.1
(3)
A 		4.1
(-1.8)
A 		11.9
(1.9)
A 		12
C 9.7
(-1.9)
A 		15.4
(2)
A 		16.9
(3)
A 		11.2
(-0.8)
A 		8
(-3)
A 		15.1
(1.8)
A 		9
avr 7
(-1.2) 		12.8
(2.9) 		11.4
(1.9) 		11.4
(1.9) 		4.5
(-3) 		12.9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19243
Sequence Type Exemplar sequence
Representative Public ID Y67D8B.D NCBI
Target Description Y67D8B.D /REP_DB=WormBase Gene ID /WP=CE22770 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y67D8B.D
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y67D8B.D Y67D8B.D /REP_DB=WormBase Gene ID /WP=CE22770 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3195515-3195731(+) 44.44 100.0
Sequence
Target Sequence 
>C. ELEGANS:172090_AT
ttcacctacctacgtgcttttgactacatgcgtgccttcgcctacctacgtaccttcgca
tacctacgtgccttcgcctgcctacttgcctgctttcgtgccacattaccgagattttgg
cataaaacactggtgattggtgctcatcttcttaatata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACCTACCTACGTGCTTTTGACT 523 687 40 Antisense
CTACCTACGTGCTTTTGACTACATG 518 225 45 Antisense
ACGTGCTTTTGACTACATGCGTGCC 458 93 51 Antisense
TGCTTTCGTGCCACATTACCGAGAT 490 579 130 Antisense
TCGTGCCACATTACCGAGATTTTGG 175 605 135 Antisense
CCACATTACCGAGATTTTGGCATAA 371 275 140 Antisense
TACCGAGATTTTGGCATAAAACACT 113 649 146 Antisense
AAAACACTGGTGATTGGTGCTCATC 433 129 163 Antisense
ACTGGTGATTGGTGCTCATCTTCTT 305 97 168 Antisense
GTGATTGGTGCTCATCTTCTTAATA 509 483 172 Antisense
GATTGGTGCTCATCTTCTTAATATA 416 435 174 Antisense
Sequence Source Affymetrix Proprietary Database