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[172089_x_at] glutathione S-transferase

Description Y55F3C.I /REP_DB=WormBase Gene ID /WP=CE22567 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 06      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 07      4grp_total > 47      6grp_cgc > 10      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 230.4
(3)
P 		124.9
(-3)
P 		199.4
(1.2)
P 		209.2
(1.8)
P 		106
B 268.3
(3)
P 		236.3
(1.6)
P 		129
(-3)
P 		176.4
(-1)
P 		139
C 360.9
(3)
P 		183.4
(-2.8)
P 		248.3
(-0.7)
P 		176.8
(-3)
P 		184
avr 286.5
(3) 		181.5
(-3) 		192.2
(-2.4) 		187.5
(-2.7) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 243.1
(3)
P 		184.4
(0.7)
P 		210
(1.7)
P 		142.9
(-1)
P 		92.7
(-3)
P 		106.4
(-2.5)
P 		150
B 286.3
(3)
P 		129.1
(-1.6)
P 		145.6
(-1.1)
P 		119.6
(-1.9)
P 		97.8
(-2.5)
P 		80.8
(-3)
P 		206
C 276.5
(3)
P 		132.5
(-2.2)
P 		166.6
(-1)
P 		146.4
(-1.7)
P 		110.5
(-3)
P 		124.5
(-2.5)
P 		166
avr 268.6
(3) 		148.7
(-1.3) 		174.1
(-0.4) 		136.3
(-1.7) 		100.3
(-3) 		103.9
(-2.9) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 83.9
(3)
P 		27.1
(-3)
P 		52.1
(-0.4)
P 		30.6
(-2.6)
P 		57
B 85.6
(3)
P 		58.4
(0.1)
P 		29.9
(-3)
P 		37.6
(-2.2)
P 		56
C 119.5
(3)
P 		52.7
(-1.5)
P 		86.5
(0.8)
P 		29.8
(-3)
P 		90
avr 96.3
(3) 		46.1
(-1.7) 		56.2
(-0.8) 		32.7
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 44.8
(-0.1)
P 		65.6
(3)
P 		45.7
(-0)
P 		36.2
(-1.4)
P 		28
(-2.7)
P 		25.9
(-3)
P 		40
B 99.6
(3)
P 		43
(-1.9)
P 		35.4
(-2.5)
P 		31.7
(-2.9)
P 		39.7
(-2.2)
P 		30.1
(-3)
P 		70
C 102.5
(3)
P 		40.4
(-2.1)
P 		42.4
(-1.9)
P 		29.5
(-3)
P 		35.8
(-2.5)
P 		41.7
(-2)
P 		73
avr 82.3
(3) 		49.7
(-0.9) 		41.2
(-2) 		32.5
(-3) 		34.5
(-2.8) 		32.6
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172089_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19207
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.I NCBI
Target Description Y55F3C.I /REP_DB=WormBase Gene ID /WP=CE22567 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067580(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067580 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-40) (gst-40) mRNA, complete cds. 11/11 A 
SNAP00000041560 ENSEMBL cdna:SNAP chromosome:CEL140:IV:760618:767729:1 11/11 None
GENEFINDER00000041575 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:760618:762295:1 11/11 None
F56B3.10 ENSEMBL cdna:known chromosome:CEL140:IV:760610:762342:1 gene:F56B3.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:760623-760827(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-40
Ensembl F56B3.10
Entrez Gene 176900 Entrez gene
SwissProt O45115 EMBL-EBI
WormBase CE27168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29835 Glutathione s-transferase protein 40 [Caenorhabditis elegans] ref|NP_499981.1| Glutathione S-Transferase family member (gst-40) [Caenorhabditis elegans] 1.0E-125
blast CAE65653 Hypothetical protein CBG10717 [Caenorhabditis briggsae] 1.0E-105
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 8.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.8E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.7E-14
Sequence
Target Sequence 
>C. ELEGANS:172089_X_AT
gtctcccgaccaaaaacatcgctacaagctctattacgtcaatatgagaggacgcgccga
gccaattagattggtttttcactttcttggtgtggactttgaagattaccgaatggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCCCGACCAAAAACATCGCTAC 486 467 15 Antisense
GACCAAAAACATCGCTACAAGCTCT 643 383 22 Antisense
ATCGCTACAAGCTCTATTACGTCAA 710 35 32 Antisense
CGCTACAAGCTCTATTACGTCAATA 617 253 34 Antisense
CAAGCTCTATTACGTCAATATGAGA 309 185 39 Antisense
AATATGAGAGGACGCGCCGAGCCAA 430 173 55 Antisense
GACGCGCCGAGCCAATTAGATTGGT 195 381 65 Antisense
ATTAGATTGGTTTTTCACTTTCTTG 167 13 79 Antisense
TTTTCACTTTCTTGGTGTGGACTTT 668 675 90 Antisense
CACTTTCTTGGTGTGGACTTTGAAG 326 97 94 Antisense
GGACTTTGAAGATTACCGAATGGAT 297 517 108 Antisense
Sequence Source Affymetrix Proprietary Database