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[172088_x_at]

Description Y73B3B.C /REP_DB=WormBase Gene ID /WP=CE26596 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 3
(-2.7)
A 		1.9
(-3)
A 		2.2
(-2.9)
A 		25.3
(3)
A 		23
B 16.3
(-0.7)
A 		3.5
(-2.6)
A 		0.9
(-3)
A 		41.4
(3)
A 		41
C 1.4
(-3)
A 		6.6
(3)
A 		1.6
(-2.8)
A 		5.8
(2.1)
A 		5
avr 6.9
(-1.6) 		4
(-2.4) 		1.6
(-3) 		24.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.1
(-1.5)
A 		2.6
(-0.6)
A 		1.5
(-2.6)
A 		4.5
(3)
A 		3.8
(1.7)
A 		1.3
(-3)
A 		3
B 1.5
(-2.3)
A 		0.4
(-3)
A 		8.3
(2.4)
A 		9.2
(3)
A 		2.6
(-1.5)
A 		6.6
(1.2)
A 		9
C 0.7
(-3)
A 		33.2
(3)
A 		3
(-2.6)
A 		1.7
(-2.8)
A 		1.6
(-2.8)
A 		2.5
(-2.7)
A 		33
avr 1.4
(-3) 		12.1
(3) 		4.3
(-1.4) 		5.1
(-0.9) 		2.7
(-2.3) 		3.5
(-1.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-1.7)
A 		0.4
(-3)
A 		0.6
(-2.6)
A 		3.7
(3)
A 		3
B 5.2
(0.5)
A 		0.9
(-2.5)
A 		0.2
(-3)
A 		8.8
(3)
A 		9
C 0.4
(-3)
A 		1.9
(3)
A 		0.6
(-2.2)
A 		1
(-0.6)
A 		2
avr 2.2
(-0.5) 		1.1
(-2.1) 		0.5
(-3) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-2.3)
A 		0.9
(1.5)
A 		0.3
(-3)
A 		1.1
(3)
A 		1.1
(3)
A 		0.3
(-3)
A 		1
B 0.5
(-2)
A 		0.1
(-3)
A 		2
(1.8)
A 		2.4
(2.8)
A 		1.1
(-0.5)
A 		2.5
(3)
A 		2
C 0.3
(-3)
A 		10.1
(3)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		0.5
(-2.9)
A 		0.8
(-2.7)
A 		10
avr 0.4
(-3) 		3.7
(3) 		1
(-1.9) 		1.3
(-1.4) 		0.9
(-2.1) 		1.2
(-1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172088_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19623
Sequence Type Exemplar sequence
Representative Public ID Y73B3B.C NCBI
Target Description Y73B3B.C /REP_DB=WormBase Gene ID /WP=CE26596 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075649 NCBI Caenorhabditis elegans Y73B3B.3 (Y73B3B.3) mRNA, complete cds. 11/11 None
SNAP00000035180 ENSEMBL cdna:SNAP chromosome:CEL140:X:199121:212240:1 9/11 None
GENEFINDER00000035183 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:211441:213833:1 9/11 None
Y73B3B.3 ENSEMBL cdna:known chromosome:CEL140:X:211441:211676:1 gene:Y73B3B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064182 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000026055 3/11 Cross Hyb Matching Probes None
Y57A10A.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:211440-211676(+) 100.0 100.0
chrII:12151415-12151650(+) 91.4 91.4
Public Domain and Genome References
Gene Title
Ensembl Y73B3B.3
Entrez Gene 190642 Entrez gene
SwissProt Q95XD9 EMBL-EBI
WormBase CE26596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39375 Hypothetical protein Y73B3B.4 [Caenorhabditis elegans] ref|NP_508052.2| Y73B3B.4 [Caenorhabditis elegans] 0.0
blast AAK68386 Hypothetical protein F53H1.1 [Caenorhabditis elegans] ref|NP_500063.1| F53H1.1a [Caenorhabditis elegans] 0.0
blast NP_500062 F53H1.1b [Caenorhabditis elegans] 0.0
blast CAB55009 Hypothetical protein Y57A10A.4 [Caenorhabditis elegans] ref|NP_496584.1| Y57A10A.4 [Caenorhabditis elegans] 4.0E-36
blast CAB55010 Hypothetical protein Y57A10A.5 [Caenorhabditis elegans] ref|NP_496585.1| Y57A10A.5 [Caenorhabditis elegans] 1.0E-35
blast T31628 hypothetical protein Y57A10A.f - Caenorhabditis elegans 2.0E-35
blast AAK39372 Hypothetical protein Y73B3B.3 [Caenorhabditis elegans] ref|NP_508050.1| Y73B3B.3 [Caenorhabditis elegans] 6.0E-12
blast T31625 hypothetical protein Y57A10A.c - Caenorhabditis elegans 8.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 2.0E-44
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.7E-30
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 8.3E-52
Pfam IPR006570 EMBL-EBI SPK 3.0E-45
Sequence
Target Sequence 
>C. ELEGANS:172088_X_AT
gaaggccaaagatttcctggtcaagttcaaattcttccttcttggactggatttttccga
acttctggagcttcaacaaaatgttcaagagaagattgacgagtcagatattgcagagaa
gattctcatgtacagcgacatccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCCAAAGATTTCCTGGTCAAG 387 333 15 Antisense
TCCTGGTCAAGTTCAAATTCTTCCT 269 593 29 Antisense
CAAATTCTTCCTTCTTGGACTGGAT 119 195 42 Antisense
TCCTTCTTGGACTGGATTTTTCCGA 75 587 50 Antisense
GGACTGGATTTTTCCGAACTTCTGG 332 521 58 Antisense
GATTTTTCCGAACTTCTGGAGCTTC 660 427 64 Antisense
TTTCCGAACTTCTGGAGCTTCAACA 287 663 68 Antisense
ACTTCTGGAGCTTCAACAAAATGTT 393 101 75 Antisense
ATTGACGAGTCAGATATTGCAGAGA 375 5 109 Antisense
GAGAAGATTCTCATGTACAGCGACA 611 391 130 Antisense
GATTCTCATGTACAGCGACATCCGC 489 431 135 Antisense
Sequence Source Affymetrix Proprietary Database