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[172087_x_at]

Description D2007.3 /REP_DB=WormBase Gene ID /WP=CE00128 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 3.5
(-3)
A 		31.3
(1.4)
A 		19.3
(-0.5)
A 		41.5
(3)
A 		38
B 4.2
(-3)
A 		16.1
(3)
A 		7.1
(-1.5)
A 		9.7
(-0.2)
A 		12
C 25.1
(0.6)
A 		3.7
(-3)
A 		39.8
(3)
A 		21.8
(0)
A 		36
avr 10.9
(-3) 		17
(-0.3) 		22.1
(2) 		24.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 3
(-2.9)
A 		18.9
(3)
A 		3
(-2.9)
A 		16.2
(2)
A 		2.6
(-3)
A 		5.4
(-2)
A 		16
B 27.6
(0.9)
A 		41.2
(3)
A 		3.3
(-3)
A 		5.6
(-2.6)
A 		4
(-2.9)
A 		3.1
(-3)
A 		38
C 3.7
(-2.6)
A 		3.3
(-2.7)
A 		7
(-1.8)
A 		2.3
(-3)
A 		26.1
(3)
A 		2.6
(-2.9)
A 		24
avr 11.4
(-0.3) 		21.1
(3) 		4.4
(-2.8) 		8
(-1.5) 		10.9
(-0.5) 		3.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-3)
A 		6.8
(3)
A 		5
(1)
A 		6.1
(2.2)
A 		6
B 1.3
(-3)
A 		4
(3)
A 		1.7
(-2.1)
A 		2.1
(-1.2)
A 		3
C 8.3
(0.4)
A 		1.1
(-3)
A 		13.9
(3)
A 		3.7
(-1.8)
A 		13
avr 3.6
(-3) 		4
(-2.3) 		6.9
(3) 		4
(-2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.7
(3)
A 		0.7
(-2.9)
A 		4.1
(0.4)
A 		0.8
(-2.8)
A 		1.3
(-2.3)
A 		6
B 9.6
(1.1)
A 		13.7
(3)
A 		0.8
(-3)
A 		1.5
(-2.7)
A 		1.6
(-2.6)
A 		1.2
(-2.8)
A 		13
C 1.4
(-2.3)
A 		1
(-2.6)
A 		1.8
(-2)
A 		0.5
(-3)
A 		8.5
(3)
A 		0.9
(-2.7)
A 		8
avr 3.9
(-0.2) 		7.1
(3) 		1.1
(-3) 		2
(-2.1) 		3.6
(-0.5) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172087_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6463
Sequence Type Exemplar sequence
Representative Public ID D2007.3 NCBI
Target Description D2007.3 /REP_DB=WormBase Gene ID /WP=CE00128 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066378 NCBI Caenorhabditis elegans D2007.3 (D2007.3) mRNA, complete cds. 11/11 None
GENEFINDER00000026071 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8148896:8154432:1 11/11 None
D2007.3 ENSEMBL cdna:known chromosome:CEL140:III:8148896:8149054:1 gene:D2007.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8148891-8149050(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2007.3
Entrez Gene 183939 Entrez gene
SwissProt P34377 EMBL-EBI
WormBase CE00128 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27998 Hypothetical protein D2007.2 [Caenorhabditis elegans] ref|NP_498780.1| D2007.2 [Caenorhabditis elegans] sp|P34376|YLM2_CAEEL Hypothetical protein D2007.2 in chromosome III 6.0E-88
blast CAE70200 Hypothetical protein CBG16675 [Caenorhabditis briggsae] 1.0E-83
blast AAA28000 Hypothetical protein D2007.3 [Caenorhabditis elegans] ref|NP_498779.1| D2007.3 [Caenorhabditis elegans] sp|P34377|YLM3_CAEEL Hypothetical protein D2007.3 in chromosome III 9.0E-24
blast AAA28000 Hypothetical protein D2007.3 [Caenorhabditis elegans] ref|NP_498779.1| D2007.3 [Caenorhabditis elegans] sp|P34377|YLM3_CAEEL Hypothetical protein D2007.3 in chromosome III 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.2E-28
Sequence
Target Sequence 
>C. ELEGANS:172087_X_AT
tggctgaacacgtggctcttgaagacataacaaattgtccaattcataatattgatgaag
ataataatgttttttcaactactacaacccgtccatctcgtaccgaacatcgactcagaa
tgcttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTGAACACGTGGCTCTTGAAGA 585 543 14 Antisense
GCTGAACACGTGGCTCTTGAAGACA 15 297 16 Antisense
AACACGTGGCTCTTGAAGACATAAC 183 135 20 Antisense
GAAGACATAACAAATTGTCCAATTC 557 339 34 Antisense
AATTGTCCAATTCATAATATTGATG 489 179 46 Antisense
TAATAATGTTTTTTCAACTACTACA 214 615 75 Antisense
TCCATCTCGTACCGAACATCGACTC 369 589 105 Antisense
ATCTCGTACCGAACATCGACTCAGA 177 33 108 Antisense
CTCGTACCGAACATCGACTCAGAAT 264 231 110 Antisense
TACCGAACATCGACTCAGAATGCTT 520 649 114 Antisense
CGAACATCGACTCAGAATGCTTGCA 687 251 117 Antisense
Sequence Source Affymetrix Proprietary Database