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[172086_x_at]

Description C06E1.5 /REP_DB=WormBase Gene ID /WP=CE00060 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.5
(3)
A 		9.5
(-3)
A 		13
(0)
A 		10.9
(-1.8)
A 		7
B 21.1
(3)
A 		6.7
(-2.3)
A 		10.6
(-0.8)
A 		4.7
(-3)
A 		16
C 21.8
(3)
A 		5.8
(-2.3)
A 		4
(-2.9)
A 		3.7
(-3)
A 		18
avr 19.8
(3) 		7.3
(-2.6) 		9.2
(-1.7) 		6.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.6
(-2.2)
A 		3.2
(-2.8)
A 		14.8
(2.1)
A 		9.9
(0.1)
A 		2.7
(-3)
A 		16.8
(3)
A 		14
B 18.9
(0.8)
A 		14.2
(-0.3)
A 		29.1
(3)
A 		14.4
(-0.2)
A 		2.9
(-2.7)
A 		1.6
(-3)
A 		28
C 2.1
(-2.4)
A 		2.1
(-2.4)
A 		6.3
(3)
A 		3.2
(-1)
A 		2.7
(-1.6)
A 		1.6
(-3)
A 		5
avr 8.5
(-0.5) 		6.5
(-1.4) 		16.7
(3) 		9.2
(-0.2) 		2.8
(-3) 		6.7
(-1.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6
(3)
A 		2.1
(-2.3)
A 		3.4
(-0.5)
A 		1.6
(-3)
A 		4
B 6.7
(3)
A 		1.7
(-2.3)
A 		2.5
(-1.4)
A 		1
(-3)
A 		6
C 7.2
(3)
A 		1.7
(-2)
A 		1.4
(-2.3)
A 		0.6
(-3)
A 		7
avr 6.6
(3) 		1.8
(-2.2) 		2.4
(-1.6) 		1.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		1.1
(-2.5)
A 		3.2
(1.4)
A 		2.5
(0.1)
A 		0.8
(-3)
A 		4.1
(3)
A 		3
B 6.6
(2.5)
A 		4.7
(0.8)
A 		7.1
(3)
A 		3.8
(-0)
A 		1.2
(-2.4)
A 		0.6
(-3)
A 		7
C 0.8
(-1.4)
A 		0.6
(-2.5)
A 		1.6
(3)
A 		0.6
(-2.5)
A 		0.9
(-0.8)
A 		0.5
(-3)
A 		1
avr 2.8
(0.6) 		2.1
(-0.8) 		4
(3) 		2.3
(-0.4) 		1
(-3) 		1.7
(-1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172086_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6715
Sequence Type Exemplar sequence
Representative Public ID C06E1.5 NCBI
Target Description C06E1.5 /REP_DB=WormBase Gene ID /WP=CE00060 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066487 NCBI Caenorhabditis elegans C06E1.5 (C06E1.5) mRNA, complete cds. 11/11 None
C06E1.5 ENSEMBL cdna:known chromosome:CEL140:III:8589239:8589391:-1 gene:C06E1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8589233-8589386(-) 100.0 100.0
chrIII:8590730-8590880(-) 90.2 90.2
Public Domain and Genome References
Gene Title
Ensembl C06E1.5
Entrez Gene 182314 Entrez gene
SwissProt P34300 EMBL-EBI
WormBase CE00060 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498888.1 1 5-27
C06E1.5 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:172086_X_AT
gaacgtttattctgtattcatcttcgctatattggcaatttcatcggcttctggaatctt
cctacctggaggcggaggcaagaagtgtggaggatatgggggtggatatggaagtggagt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTTTATTCTGTATTCATCTTC 515 347 15 Antisense
GTATTCATCTTCGCTATATTGGCAA 318 453 28 Antisense
TCATCTTCGCTATATTGGCAATTTC 179 621 32 Antisense
TATTGGCAATTTCATCGGCTTCTGG 480 665 44 Antisense
TCATCGGCTTCTGGAATCTTCCTAC 276 621 55 Antisense
TTCTGGAATCTTCCTACCTGGAGGC 97 695 63 Antisense
TCTTCCTACCTGGAGGCGGAGGCAA 667 615 71 Antisense
TCCTACCTGGAGGCGGAGGCAAGAA 569 589 74 Antisense
GAGGCGGAGGCAAGAAGTGTGGAGG 2 407 83 Antisense
GAAGTGTGGAGGATATGGGGGTGGA 295 335 96 Antisense
TGGGGGTGGATATGGAAGTGGAGTC 644 551 111 Antisense
Sequence Source Affymetrix Proprietary Database