[Home] | [Total List]

[172085_x_at]

Description Y73B3B.B /REP_DB=WormBase Gene ID /WP=CE26595 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 27      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 261.1
(3)
P 		163
(-2)
P 		144.5
(-3)
P 		163
(-2)
P 		117
B 263.4
(3)
P 		179.4
(-3)
P 		241.1
(1.4)
P 		248.5
(1.9)
P 		84
C 257.6
(3)
P 		241.6
(1.9)
P 		170.4
(-3)
P 		250.9
(2.5)
P 		87
avr 260.7
(3) 		194.7
(-2.3) 		185.3
(-3) 		220.8
(-0.2) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 236
(2.4)
P 		248
(3)
P 		153.5
(-1.9)
P 		170.6
(-1)
P 		132.3
(-3)
P 		180.8
(-0.5)
P 		116
B 243
(3)
P 		168.8
(-1.3)
P 		140.3
(-3)
P 		186.5
(-0.3)
P 		168.6
(-1.3)
P 		164.3
(-1.6)
P 		103
C 221.2
(3)
P 		165.2
(-1.7)
P 		209.9
(2.1)
P 		149.4
(-3)
P 		193.6
(0.7)
P 		214.6
(2.4)
P 		72
avr 233.4
(3) 		194
(-0.4) 		167.9
(-2.7) 		168.8
(-2.7) 		164.8
(-3) 		186.6
(-1.1) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 95.1
(3)
P 		35.4
(-2)
P 		37.8
(-1.8)
P 		23.9
(-3)
P 		71
B 84
(3)
P 		44.3
(-3)
P 		55.9
(-1.2)
P 		53
(-1.7)
P 		40
C 85.3
(3)
P 		69.5
(0.8)
P 		59.4
(-0.6)
P 		42.3
(-3)
P 		43
avr 88.1
(3) 		49.7
(-1.8) 		51
(-1.6) 		39.7
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 43.5
(-1.9)
P 		88.2
(3)
P 		33.4
(-3)
P 		43.3
(-1.9)
P 		39.9
(-2.3)
P 		44
(-1.8)
P 		55
B 84.6
(3)
P 		56.2
(-0.4)
P 		34.1
(-3)
P 		49.4
(-1.2)
P 		68.5
(1.1)
P 		61.3
(0.2)
P 		51
C 82
(3)
P 		50.4
(-0.6)
P 		53.4
(-0.3)
P 		30
(-3)
P 		62.6
(0.8)
P 		71.8
(1.8)
P 		52
avr 70
(3) 		64.9
(2) 		40.3
(-3) 		40.9
(-2.9) 		57
(0.4) 		59
(0.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172085_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19570
Sequence Type Exemplar sequence
Representative Public ID Y73B3B.B NCBI
Target Description Y73B3B.B /REP_DB=WormBase Gene ID /WP=CE26595 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075651 NCBI Caenorhabditis elegans Y73B3B.4 (Y73B3B.4) mRNA, complete cds. 11/11 A 
SNAP00000035180 ENSEMBL cdna:SNAP chromosome:CEL140:X:199121:212240:1 10/11 None
GENEFINDER00000035182 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:200239:207723:1 11/11 None
Y73B3B.4 ENSEMBL cdna:known chromosome:CEL140:X:199223:207784:1 gene:Y73B3B.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067662 6/11 Cross Hyb Matching Probes A B 
NM_067661 7/11 Cross Hyb Matching Probes A B 
SNAP00000013765 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013782 6/11 Cross Hyb Matching Probes None
F53H1.1a 6/11 Cross Hyb Matching Probes A B 
F53H1.1b 7/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:200469-207723(+) 100.0 100.0
chrIV:1297405-1308217(-) 98.69 98.69
Public Domain and Genome References
Gene Title
Ensembl Y73B3B.4
Entrez Gene 180379 Entrez gene
SwissProt Q95XD7 EMBL-EBI
WormBase CE29920 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39375 Hypothetical protein Y73B3B.4 [Caenorhabditis elegans] ref|NP_508052.2| Y73B3B.4 [Caenorhabditis elegans] 0.0
blast NP_500062 F53H1.1b [Caenorhabditis elegans] 0.0
blast AAK68386 Hypothetical protein F53H1.1 [Caenorhabditis elegans] ref|NP_500063.1| F53H1.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.7E-30
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 2.6E-50
Pfam IPR006570 EMBL-EBI SPK 2.0E-44
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.7E-30
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 8.3E-52
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.7E-30
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.4E-34
Sequence
Target Sequence 
>C. ELEGANS:172085_X_AT
aattcagttgcttcattacatggaggaattgatcaacatgatcgagattcatcgattgct
gactttaaaactggtgttattaaggttttggtagcaacatcagttgcagctcgaggtctt
gacgtgaaaaatctgattctcgttgtcaattacgactgtccaaatcactatgaagactat
gtacatcgagttggaagaactggacgggcgggacgaaaggaccaagaaaagatggccgga
gaggtttgccgggcttttgagacagctggatgtaagccgccggcagatttgaaggcaatg
ttcgaacggttcaaaagtgagatggctgcagagggaaaagatgttaaattgggtggaaaa
ggtttcgaaggatccgattataagtatgatgagggtgaagctgaagctgatgccaataag
aagaggatgaccagattgaccgctcaacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAGTTGCTTCATTACATGGAG 613 173 826 Antisense
GAGATTCATCGATTGCTGACTTTAA 399 397 869 Antisense
AGTTGCAGCTCGAGGTCTTGACGTG 634 61 927 Antisense
AAATCTGATTCTCGTTGTCAATTAC 168 119 954 Antisense
TTACGACTGTCCAAATCACTATGAA 360 681 975 Antisense
TGGAAGAACTGGACGGGCGGGACGA 619 545 1017 Antisense
GATGGCCGGAGAGGTTTGCCGGGCT 617 405 1056 Antisense
GTTTGCCGGGCTTTTGAGACAGCTG 168 451 1069 Antisense
GAGACAGCTGGATGTAAGCCGCCGG 681 391 1084 Antisense
GTAAGCCGCCGGCAGATTTGAAGGC 303 461 1097 Antisense
TGACCAGATTGACCGCTCAACTTCA 122 571 1253 Antisense
Sequence Source Affymetrix Proprietary Database