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[172082_x_at]

Description Y41D4B.Z /REP_DB=WormBase Gene ID /WP=CE26100 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 48      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 66.1
(0.8)
A 		41
(-3)
A 		80.2
(3)
A 		67.8
(1.1)
A 		39
B 17.8
(-2.7)
A 		15.6
(-3)
A 		38.3
(-0.2)
A 		64.7
(3)
A 		49
C 96.6
(1.9)
A 		86
(1.3)
A 		11.1
(-3)
A 		116.6
(3)
A 		106
avr 60.2
(-0.4) 		47.5
(-2.4) 		43.2
(-3) 		83
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 83.6
(3)
A 		12.8
(-2.3)
A 		11.2
(-2.4)
A 		9.7
(-2.5)
A 		3.2
(-3)
A 		40.1
(-0.2)
A 		80
B 9.8
(-2.5)
A 		15.1
(-1.8)
A 		5.6
(-3)
A 		54.9
(3)
A 		5.4
(-3)
A 		43.9
(1.7)
A 		50
C 15.4
(3)
A 		8.6
(-3)
A 		10
(-1.8)
A 		14.8
(2.5)
A 		12.3
(0.3)
A 		15.2
(2.8)
A 		7
avr 36.3
(3) 		12.2
(-1.9) 		8.9
(-2.6) 		26.5
(1) 		7
(-3) 		33.1
(2.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 24.1
(3)
A 		8.9
(-3)
A 		21
(1.8)
A 		9.9
(-2.6)
A 		15
B 5.7
(-1.9)
A 		3.8
(-3)
A 		8.9
(0.1)
A 		13.8
(3)
A 		10
C 32
(3)
A 		24.7
(1.4)
A 		3.9
(-3)
A 		19.7
(0.4)
A 		28
avr 20.6
(3) 		12.5
(-2.2) 		11.3
(-3) 		14.5
(-0.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 15.4
(3)
A 		4.6
(-1.5)
A 		2.4
(-2.4)
A 		2.5
(-2.4)
A 		1
(-3)
A 		9.8
(0.7)
A 		14
B 3.4
(-2.2)
A 		5
(-1.5)
A 		1.3
(-3)
A 		14.6
(2.3)
A 		2.2
(-2.6)
A 		16.4
(3)
A 		15
C 5.7
(3)
A 		2.6
(-2.8)
A 		2.5
(-3)
A 		3
(-2.1)
A 		4
(-0.2)
A 		5.1
(1.9)
A 		3
avr 8.2
(1.4) 		4.1
(-1.6) 		2.1
(-3) 		6.7
(0.3) 		2.4
(-2.8) 		10.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172082_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19147
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.Z NCBI
Target Description Y41D4B.Z /REP_DB=WormBase Gene ID /WP=CE26100 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067715
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y41D4B.4 ENSEMBL cdna:known chromosome:CEL140:IV:1660110:1669681:1 gene:Y41D4B.4 None
GENEFINDER00000005545 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1665868:1669978:1 None
NM_067715 NCBI Caenorhabditis elegans Y41D4B.4 (Y41D4B.4) mRNA, complete cds. None
SNAP00000005524 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1660706:1672173:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067659 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000006274 3/11 Cross Hyb Matching Probes None
GENEFINDER00000016281 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014624 3/11 Cross Hyb Matching Probes None
Y104H12BL.1 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1669203-1669484(+) 55.11 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.4
Entrez Gene 176976 Entrez gene
SwissProt Q8WSN7 EMBL-EBI
WormBase CE37566 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68478 Hypothetical protein Y41D4B.4 [Caenorhabditis elegans] ref|NP_500116.3| Y41D4B.4 [Caenorhabditis elegans] 0.0
blast CAE67975 Hypothetical protein CBG13581 [Caenorhabditis briggsae] 1.0E-142
blast AAK68478 Hypothetical protein Y41D4B.4 [Caenorhabditis elegans] ref|NP_500116.3| Y41D4B.4 [Caenorhabditis elegans] 1.0E-111
blast CAE67975 Hypothetical protein CBG13581 [Caenorhabditis briggsae] 7.0E-60
Sequence
Target Sequence 
>C. ELEGANS:172082_X_AT
tggccgctgaaacttgtcggcccctcggccatggcctagaaaccacttttcctcgtccct
cactacccgaacgaccatgcagctcaattacaacagtccagcaatcgccgtcggctcttc
aagaagttgtaaatgttcatgagaatgcacaagattcgtcagaaggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCGCTGAAACTTGTCGGCCCCT 617 535 14 Antisense
CCCTCGGCCATGGCCTAGAAACCAC 336 259 35 Antisense
CATGGCCTAGAAACCACTTTTCCTC 364 209 43 Antisense
CCGAACGACCATGCAGCTCAATTAC 415 263 80 Antisense
GACCATGCAGCTCAATTACAACAGT 364 383 86 Antisense
ATGCAGCTCAATTACAACAGTCCAG 439 43 90 Antisense
CAATTACAACAGTCCAGCAATCGCC 31 181 98 Antisense
CAATCGCCGTCGGCTCTTCAAGAAG 140 183 115 Antisense
GCCGTCGGCTCTTCAAGAAGTTGTA 599 283 120 Antisense
GTAAATGTTCATGAGAATGCACAAG 447 461 142 Antisense
TGCACAAGATTCGTCAGAAGGAGAA 245 577 159 Antisense
Sequence Source Affymetrix Proprietary Database