[Home] | [Total List]

[172081_x_at]

Description Y50D4A.D /REP_DB=WormBase Gene ID /WP=CE26410 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 55      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 118.6
(2.6)
A 		74.1
(-0.2)
A 		29
(-3)
A 		124.7
(3)
A 		96
B 60.9
(-1)
A 		34.8
(-3)
A 		52
(-1.7)
A 		112.6
(3)
P 		78
C 84.9
(-0.2)
A 		74.4
(-0.6)
A 		12.1
(-3)
A 		168.6
(3)
M 		157
avr 88.1
(0.3) 		61.1
(-1.3) 		31
(-3) 		135.3
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 98.4
(3)
A 		41.3
(-3)
A 		77
(0.8)
A 		49.2
(-2.2)
A 		72.4
(0.3)
A 		69.9
(0)
A 		57
B 49.1
(-1.7)
A 		58.8
(-0.7)
A 		62.7
(-0.3)
A 		68.7
(0.4)
A 		36.4
(-3)
A 		94
(3)
A 		58
C 41.9
(-1.5)
A 		103.4
(3)
A 		69.8
(0.5)
A 		77.4
(1.1)
A 		21.3
(-3)
A 		70.2
(0.6)
A 		82
avr 63.1
(0.4) 		67.8
(1.2) 		69.8
(1.6) 		65.1
(0.8) 		43.4
(-3) 		78
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 43.2
(3)
A 		16.1
(-1.6)
A 		7.6
(-3)
A 		18.2
(-1.2)
A 		36
B 19.4
(1.2)
A 		8.6
(-3)
A 		12.1
(-1.6)
A 		24
(3)
P 		15
C 28.1
(2.9)
A 		21.4
(1.3)
A 		4.2
(-3)
A 		28.4
(3)
M 		24
avr 30.2
(3) 		15.4
(-1) 		8
(-3) 		23.5
(1.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18.1
(0.6)
A 		14.7
(-1.6)
A 		16.8
(-0.2)
A 		12.5
(-3)
A 		21.8
(3)
A 		17
(-0.1)
A 		9
B 17.1
(-2.3)
A 		19.6
(-1.6)
A 		15.2
(-2.9)
A 		18.2
(-2)
A 		14.8
(-3)
A 		35.1
(3)
A 		20
C 15.5
(-0.9)
A 		31.5
(3)
A 		17.8
(-0.3)
A 		15.6
(-0.9)
A 		6.9
(-3)
A 		23.5
(1)
A 		25
avr 16.9
(-1.7) 		21.9
(1.1) 		16.6
(-1.8) 		15.4
(-2.5) 		14.5
(-3) 		25.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172081_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19520
Sequence Type Exemplar sequence
Representative Public ID Y50D4A.D NCBI
Target Description Y50D4A.D /REP_DB=WormBase Gene ID /WP=CE26410 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070990
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1181406:1195923:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070990 6/11 Cross Hyb Matching Probes None
NM_070991 1/11 Cross Hyb Matching Probes None
SNAP00000016425 1/11 Cross Hyb Matching Probes None
SNAP00000016427 6/11 Cross Hyb Matching Probes None
GENEFINDER00000003766 1/11 Cross Hyb Matching Probes None
Y50D4A.3 6/11 Cross Hyb Matching Probes None
Y50D4A.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1181405-1183426(-) 91.88 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68504 Hypothetical protein Y50D4A.3 [Caenorhabditis elegans] ref|NP_503391.1| Y50D4A.3 [Caenorhabditis elegans] 0.0
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 1.0E-172
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR009755 EMBL-EBI Colon cancer-associated Mic1-like 1.4E-91
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-21
Sequence
Target Sequence 
>C. ELEGANS:172081_X_AT
ctggcttctctttggttctatatgacacctcaaccaccgaaaccagcaatgcatgatatt
gtaatgggaaactggaatagtggagcaaagaatgcagcagctggatatgatggaccaatc
tttggaccaacttcattgatcattaacaatgaatgttctggagaagatccaacaaatcca
ggaggtccaggagaatctagaagaatcaaggcattcaaatggttcaatggatattttggt
tcccccgttggacctgagcatacattgtcctgtaaaaaacgcctcattacgaaattcggt
agttttggaccattcgcctccctctataagtcgattggtgatgagctgtacactgccgat
gaagtgaaagaagttaagaaagtatgtgtatgtgattttacggttttgtcgaggtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGCTTCTCTTTGGTTCTATATGA 457 241 34 Antisense
GGTTCTATATGACACCTCAACCACC 261 507 47 Antisense
TCAACCACCGAAACCAGCAATGCAT 385 629 63 Antisense
GGACCAATCTTTGGACCAACTTCAT 372 521 145 Antisense
TCAATGGATATTTTGGTTCCCCCGT 103 633 257 Antisense
CCCCGTTGGACCTGAGCATACATTG 484 199 276 Antisense
ATTGTCCTGTAAAAAACGCCTCATT 683 1 297 Antisense
TTCGGTAGTTTTGGACCATTCGCCT 98 563 328 Antisense
GCCTCCCTCTATAAGTCGATTGGTG 302 281 349 Antisense
GATTGGTGATGAGCTGTACACTGCC 558 435 366 Antisense
GATTTTACGGTTTTGTCGAGGTGCT 378 427 427 Antisense
Sequence Source Affymetrix Proprietary Database