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[172080_at]

Description Y50D4A.G /REP_DB=WormBase Gene ID /WP=CE25346 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 65      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.8
(-1.3)
A 		9.3
(0)
A 		14.9
(3)
A 		3.6
(-3)
A 		11
B 2.4
(-3)
A 		17.5
(3)
A 		6.2
(-1.5)
A 		4.1
(-2.3)
A 		15
C 2.7
(-3)
A 		12.4
(3)
A 		3.2
(-2.7)
A 		3.5
(-2.5)
A 		10
avr 4
(-2.8) 		13.1
(3) 		8.1
(-0.2) 		3.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.3
(-3)
A 		5.1
(-1.9)
A 		2.4
(-3)
A 		3.5
(-2.5)
A 		12.9
(1.2)
A 		17.5
(3)
A 		15
B 1.7
(-3)
A 		5.7
(-0.9)
A 		5.5
(-1)
A 		2.3
(-2.7)
A 		5.7
(-0.9)
A 		13.1
(3)
A 		11
C 18.2
(1.7)
A 		1.5
(-2.9)
A 		22.9
(3)
A 		19.9
(2.2)
A 		3.3
(-2.4)
A 		1.1
(-3)
A 		22
avr 7.4
(0) 		4.1
(-3) 		10.3
(2.7) 		8.6
(1.2) 		7.3
(-0) 		10.6
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.5
(0.5)
A 		2
(-0.4)
A 		3.9
(3)
A 		0.5
(-3)
A 		3
B 0.8
(-3)
A 		4.3
(3)
A 		1.4
(-2)
A 		0.9
(-2.8)
A 		4
C 0.9
(-2.4)
A 		3.6
(3)
A 		1.1
(-2)
A 		0.6
(-3)
A 		3
avr 1.4
(-1.4) 		3.3
(3) 		2.1
(0.2) 		0.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.8
(-0.8)
A 		0.5
(-2.8)
A 		0.9
(-2.2)
A 		3.9
(2.4)
A 		4.3
(3)
A 		4
B 0.6
(-3)
A 		1.9
(-1.2)
A 		1.3
(-2)
A 		0.6
(-3)
A 		2.3
(-0.6)
A 		4.9
(3)
A 		4
C 6.7
(3)
A 		0.4
(-3)
A 		5.8
(2.1)
A 		4
(0.4)
A 		1.1
(-2.3)
A 		0.4
(-3)
A 		6
avr 2.6
(1) 		1.4
(-3) 		2.5
(0.7) 		1.8
(-1.7) 		2.4
(0.3) 		3.2
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19549
Sequence Type Exemplar sequence
Representative Public ID Y50D4A.G NCBI
Target Description Y50D4A.G /REP_DB=WormBase Gene ID /WP=CE25346 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000016431 ENSEMBL cdna:SNAP chromosome:CEL140:V:1204779:1205141:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020820 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020836 1/11 Cross Hyb Matching Probes None
SNAP00000004112 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1204818-1204938(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 3.0E-19
blast CAB54468 Hypothetical protein Y64G10A.3 [Caenorhabditis elegans] ref|NP_502734.1| Y64G10A.3 [Caenorhabditis elegans] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172080_AT
atgagggaacaggaggccaacatcaagaagaagattcaatgtcagctcaaccaaatgaag
ggaatgaccggaaccaagtgggaatgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGGAACAGGAGGCCAACATCA 140 43 13 Antisense
GAGGGAACAGGAGGCCAACATCAAG 700 401 15 Antisense
GGAACAGGAGGCCAACATCAAGAAG 49 529 18 Antisense
CAGGAGGCCAACATCAAGAAGAAGA 98 207 22 Antisense
AAGAAGATTCAATGTCAGCTCAACC 232 153 40 Antisense
GAAGATTCAATGTCAGCTCAACCAA 629 337 42 Antisense
GATTCAATGTCAGCTCAACCAAATG 285 431 45 Antisense
CAATGTCAGCTCAACCAAATGAAGG 266 183 49 Antisense
GTCAGCTCAACCAAATGAAGGGAAT 609 465 53 Antisense
GGAATGACCGGAACCAAGTGGGAAT 129 531 73 Antisense
GACCGGAACCAAGTGGGAATGCAAC 295 381 78 Antisense
Sequence Source Affymetrix Proprietary Database