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[172079_s_at]

Description Y105E8B.QQ /REP_DB=WormBase Gene ID /WP=CE24100 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 86      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 37.4
(-3)
A 		143
(-0.9)
A 		52.1
(-2.7)
A 		344.6
(3)
P 		307
B 123.4
(-1.2)
A 		77.4
(-3)
A 		87
(-2.6)
A 		228.3
(3)
P 		151
C 121.6
(-1.7)
A 		44.7
(-3)
A 		87.7
(-2.3)
A 		393.1
(3)
P 		348
avr 94.1
(-2.5) 		88.4
(-2.7) 		75.6
(-3) 		322
(3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 177.9
(0.4)
A 		89.5
(-3)
A 		167.9
(0)
P 		195.8
(1.1)
P 		206.6
(1.5)
A 		245.3
(3)
P 		156
B 71.9
(-3)
A 		152.3
(-1.1)
A 		163.7
(-0.9)
P 		253.7
(1.2)
P 		237.2
(0.9)
P 		328.7
(3)
P 		257
C 61.2
(-3)
A 		244.9
(0.2)
A 		169.4
(-1.1)
A 		209.1
(-0.4)
A 		193.2
(-0.7)
P 		403.4
(3)
P 		342
avr 103.7
(-3) 		162.2
(-1.4) 		167
(-1.3) 		219.5
(0.1) 		212.3
(-0.1) 		325.8
(3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 13.6
(-3)
A 		31
(-0.2)
A 		13.6
(-3)
A 		50.4
(3)
P 		37
B 39.3
(1.1)
A 		19.1
(-3)
A 		20.2
(-2.8)
A 		48.6
(3)
P 		30
C 40.3
(0.1)
A 		12.9
(-3)
A 		30.6
(-1)
A 		66.3
(3)
P 		53
avr 31.1
(-1.2) 		21
(-3) 		21.5
(-2.9) 		55.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 32.8
(-2.8)
A 		31.8
(-3)
A 		36.6
(-2.1)
P 		49.7
(0.5)
P 		62.3
(3)
A 		59.7
(2.5)
P 		31
B 25
(-3)
A 		50.7
(-1.4)
A 		39.8
(-2.1)
P 		67.2
(-0.4)
P 		96.4
(1.4)
P 		122.6
(3)
P 		98
C 22.7
(-3)
A 		74.7
(-0.2)
A 		43.1
(-1.9)
A 		42.1
(-2)
A 		62.5
(-0.9)
P 		135
(3)
P 		112
avr 26.8
(-3) 		52.4
(-1.1) 		39.8
(-2) 		53
(-1) 		73.7
(0.6) 		105.8
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172079_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18797
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.QQ NCBI
Target Description Y105E8B.QQ /REP_DB=WormBase Gene ID /WP=CE24100 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061145 NCBI Caenorhabditis elegans Y105E8B.6 (Y105E8B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000011744 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14670656:14670953:1 11/11 None
Y105E8B.6 ENSEMBL cdna:known chromosome:CEL140:I:14670656:14670983:1 gene:Y105E8B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011736 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14670586-14670884(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8B.6
Entrez Gene 173324 Entrez gene
SwissProt Q9NF10 EMBL-EBI
WormBase CE24100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60854 Hypothetical protein Y105E8B.6 [Caenorhabditis elegans] ref|NP_493546.1| Y105E8B.6 [Caenorhabditis elegans] 1.0E-27
Sequence
Target Sequence 
>C. ELEGANS:172079_S_AT
gaaacgaggagcactcgcgcaaaaagttcatcgaagagcagctaaatgctctgaaacatg
aagaacgagttctgaacgagacacgtaccaaattgcaacagcaaaagtggcacctcctgc
aggaaaatgataagatcaaggagaaaattcgtgtgcgtgacgctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGAGGAGCACTCGCGCAAAAA 4 359 23 Antisense
AAAGTTCATCGAAGAGCAGCTAAAT 156 123 45 Antisense
GCAGCTAAATGCTCTGAAACATGAA 313 313 60 Antisense
ACGAGTTCTGAACGAGACACGTACC 503 93 87 Antisense
AACGAGACACGTACCAAATTGCAAC 574 143 97 Antisense
GACACGTACCAAATTGCAACAGCAA 323 367 102 Antisense
GCAACAGCAAAAGTGGCACCTCCTG 125 319 117 Antisense
AACAGCAAAAGTGGCACCTCCTGCA 226 135 119 Antisense
AAAGTGGCACCTCCTGCAGGAAAAT 514 121 126 Antisense
GTGGCACCTCCTGCAGGAAAATGAT 595 491 129 Antisense
GAAAATTCGTGTGCGTGACGCTGCC 279 353 165 Antisense
Sequence Source Affymetrix Proprietary Database