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[172078_x_at]

Description Y48G1BM.I /REP_DB=WormBase Gene ID /WP=CE26120 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 05      6grp_total > 45      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 801
1 2 3 4 range
A 175.8
(-2.2)
P 		78.6
(-3)
P 		113.5
(-2.7)
P 		826.9
(3)
P 		748
B 136
(-2.5)
P 		98.2
(-3)
P 		95
(-3)
P 		551.9
(3)
P 		457
C 123.6
(-1.7)
P 		25.7
(-3)
A 		36
(-2.9)
A 		484.2
(3)
P 		459
avr 145.1
(-2.2) 		67.5
(-3) 		81.5
(-2.8) 		621
(3) 		554

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 180.6
(0.3)
P 		102.5
(-1.6)
P 		289.2
(3)
P 		45.7
(-3)
A 		215.2
(1.2)
P 		140.3
(-0.7)
P 		244
B 177.7
(3)
P 		140.6
(1.2)
A 		67.4
(-2.5)
P 		77.6
(-2)
A 		57
(-3)
P 		169
(2.6)
P 		121
C 55.7
(-2.9)
A 		387.7
(3)
P 		64.9
(-2.7)
A 		82.1
(-2.4)
A 		47.7
(-3)
A 		161.6
(-1)
M 		340
avr 138
(-0.1) 		210.3
(3) 		140.5
(0) 		68.5
(-3) 		106.6
(-1.4) 		157
(0.7) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 64
(-0.3)
P 		17.1
(-3)
P 		29.7
(-2.3)
P 		121
(3)
P 		104
B 43.4
(-1.7)
P 		24.2
(-2.9)
P 		22
(-3)
P 		117.6
(3)
P 		96
C 40.9
(-0.3)
P 		7.4
(-3)
A 		12.6
(-2.6)
A 		81.7
(3)
P 		74
avr 49.4
(-0.8) 		16.2
(-3) 		21.4
(-2.7) 		106.8
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 33.3
(-0.6)
P 		36.5
(-0.2)
P 		63
(2.8)
P 		11.6
(-3)
A 		64.9
(3)
P 		34.2
(-0.5)
P 		53
B 61.8
(2.8)
P 		46.8
(0.9)
A 		16.4
(-3)
P 		20.5
(-2.5)
A 		23.2
(-2.1)
P 		63
(3)
P 		47
C 20.6
(-2.7)
A 		118.3
(3)
P 		16.5
(-2.9)
A 		16.5
(-2.9)
A 		15.4
(-3)
A 		54.1
(-0.7)
M 		103
avr 38.6
(-0.4) 		67.2
(3) 		32
(-1.1) 		16.2
(-3) 		34.5
(-0.8) 		50.4
(1) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172078_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18859
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.I NCBI
Target Description Y48G1BM.I /REP_DB=WormBase Gene ID /WP=CE26120 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G1BM.I
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G1BM.I Y48G1BM.I /REP_DB=WormBase Gene ID /WP=CE26120 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 1/11 Cross Hyb Matching Probes A 
NM_075710 1/11 Cross Hyb Matching Probes None
NM_078408 1/11 Cross Hyb Matching Probes A 
NM_073039 1/11 Cross Hyb Matching Probes A 
NM_061393 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000022380 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 3/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 2/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 2/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007905 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 3/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 1/11 Cross Hyb Matching Probes None
T02H6.3 1/11 Cross Hyb Matching Probes A 
Y116A8C.41 1/11 Cross Hyb Matching Probes A 
Y54B9A.1 1/11 Cross Hyb Matching Probes A 
B0310.4 1/11 Cross Hyb Matching Probes None
C53C11.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172078_X_AT
tgccttcgtggtaagacccatcgtggcgagacatatcgtggtgatatccttcgtggcgag
acccatcgtggtgagacccatcgtggcgagacccatcgtggtgagacccatcgtggtaag
acccatcgtggcgagacctttcgaaaatttggtgggaattcaaattttcttagaaacatt
ttttggtgggaattcaaaattttcaaagaaaaactttggcgggaattcaatttttcaata
aataattttggcgggaattcaaattttctaagaataattttgacgggaaattcaaatttg
ttgagaaactcgagtaaatgctggaatgttctagaaccttcctggagattggggaaaatt
ttagtatgttctagaaccatcggcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTTCGTGGTAAGACCCATCGTG 381 579 28 Antisense
GACCCATCGTGGCGAGACATATCGT 569 381 42 Antisense
ATCGTGGTGATATCCTTCGTGGCGA 225 35 62 Antisense
CCATCGTGGTGAGACCCATCGTGGC 118 271 90 Antisense
CCATCGTGGTGAGACCCATCGTGGT 124 271 120 Antisense
GACCCATCGTGGTAAGACCCATCGT 571 381 132 Antisense
TGGTAAGACCCATCGTGGCGAGACC 620 551 141 Antisense
TGGCGAGACCTTTCGAAAATTTGGT 694 537 156 Antisense
GAAACTCGAGTAAATGCTGGAATGT 146 357 332 Antisense
AATGTTCTAGAACCTTCCTGGAGAT 460 163 352 Antisense
GTATGTTCTAGAACCATCGGCGAAC 399 455 391 Antisense
Sequence Source Affymetrix Proprietary Database