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[172077_x_at]

Description Y48G1BM.H /REP_DB=WormBase Gene ID /WP=CE26119 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 11      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 4.5
(-3)
A 		6
(-2.9)
A 		7.1
(-2.9)
A 		130.9
(3)
A 		126
B 3.2
(-3)
A 		5.6
(-2.3)
A 		22.6
(3)
A 		14
(0.3)
A 		19
C 8.7
(-2.9)
A 		7.2
(-3)
A 		11.5
(-2.9)
A 		184.4
(3)
P 		177
avr 5.5
(-3) 		6.3
(-3) 		13.7
(-2.5) 		109.8
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 6.2
(-2.6)
A 		7.6
(-2.3)
A 		35.9
(3)
A 		4
(-3)
A 		26.7
(1.3)
A 		4.7
(-2.9)
A 		32
B 7.2
(-1.2)
A 		20.4
(3)
A 		5.7
(-1.7)
A 		6.1
(-1.5)
A 		18.3
(2.3)
A 		1.5
(-3)
A 		19
C 3.9
(-2.6)
A 		41.7
(3)
A 		5.6
(-2.4)
A 		4.2
(-2.6)
A 		8.3
(-2)
A 		1.4
(-3)
A 		40
avr 5.8
(-2) 		23.2
(3) 		15.7
(0.8) 		4.8
(-2.3) 		17.8
(1.4) 		2.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.7
(-2.9)
A 		1.3
(-3)
A 		1.9
(-2.8)
A 		19.2
(3)
A 		18
B 1
(-3)
A 		1.4
(-2.4)
A 		5.2
(3)
A 		3
(-0.1)
A 		4
C 2.9
(-2.8)
A 		2.1
(-3)
A 		4
(-2.6)
A 		31.1
(3)
P 		29
avr 1.9
(-2.9) 		1.6
(-3) 		3.7
(-2.2) 		17.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		2.7
(-1.6)
A 		7.8
(2.7)
A 		1
(-3)
A 		8.1
(3)
A 		1.2
(-2.8)
A 		7
B 2.5
(-1.3)
A 		6.8
(2.5)
A 		1.4
(-2.3)
A 		1.6
(-2.1)
A 		7.4
(3)
A 		0.6
(-3)
A 		7
C 1.4
(-2.6)
A 		12.7
(3)
A 		1.4
(-2.6)
A 		0.9
(-2.8)
A 		2.7
(-1.9)
A 		0.5
(-3)
A 		12
avr 1.7
(-2.2) 		7.4
(3) 		3.5
(-0.5) 		1.2
(-2.6) 		6.1
(1.8) 		0.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172077_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18854
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.H NCBI
Target Description Y48G1BM.H /REP_DB=WormBase Gene ID /WP=CE26119 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48G1BM.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48G1BM.H Y48G1BM.H /REP_DB=WormBase Gene ID /WP=CE26119 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024882 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020653 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172077_X_AT
cgatgggtctcgccacgaaggatatcaccacgatatgtctcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATGGGTCTCGCCACGAAGGATAT 699 247 71 Antisense
GATGGGTCTCGCCACGAAGGATATC 211 409 72 Antisense
GTCTCGCCACGAAGGATATCACCAC 395 471 77 Antisense
TCTCGCCACGAAGGATATCACCACG 219 611 78 Antisense
CTCGCCACGAAGGATATCACCACGA 482 233 79 Antisense
TCGCCACGAAGGATATCACCACGAT 231 599 80 Antisense
CGCCACGAAGGATATCACCACGATA 68 259 81 Antisense
GCCACGAAGGATATCACCACGATAT 617 279 82 Antisense
GAAGGATATCACCACGATATGTCTC 317 335 87 Antisense
GGATATCACCACGATATGTCTCGCC 14 511 90 Antisense
GATATCACCACGATATGTCTCGCCA 118 427 91 Antisense
Sequence Source Affymetrix Proprietary Database