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[172076_x_at]

Description Y69A2AR.E /REP_DB=WormBase Gene ID /WP=CE26562 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 86      6grp_total > 67      4grp_total > 50      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1294
1 2 3 4 range
A 890.6
(-1.6)
P 		1755.9
(3)
P 		1490.6
(1.6)
P 		628.5
(-3)
P 		1127
B 917.9
(-0.7)
P 		1629.2
(3)
P 		1294.5
(1.3)
P 		462.1
(-3)
P 		1167
C 939
(-0.6)
P 		1633.7
(3)
P 		1404.5
(1.8)
P 		476
(-3)
P 		1158
avr 915.8
(-0.9) 		1672.9
(3) 		1396.5
(1.6) 		522.2
(-3) 		1151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 563
1 2 3 4 5 6 range
A 906
(-2.5)
P 		936.6
(-2.1)
P 		859.7
(-3)
P 		883.7
(-2.7)
P 		996.2
(-1.5)
P 		1398.4
(3)
P 		539
B 1011.2
(-0.8)
P 		922.2
(-3)
P 		1164.6
(3)
P 		972.8
(-1.7)
P 		963.6
(-2)
P 		1133
(2.2)
P 		242
C 935.7
(-1.3)
P 		1021.9
(0.1)
P 		835
(-3)
P 		907.9
(-1.8)
P 		976.6
(-0.6)
P 		1194.6
(3)
P 		360
avr 951
(-2.4) 		960.2
(-2.3) 		953.1
(-2.4) 		921.5
(-3) 		978.8
(-1.9) 		1242
(3) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 324.3
(1.7)
P 		381.2
(2.8)
P 		389.7
(3)
P 		92
(-3)
P 		298
B 292.7
(0.8)
P 		402.4
(3)
P 		300
(1)
P 		98.5
(-3)
P 		304
C 310.8
(0.4)
P 		469.7
(2.7)
P 		489.5
(3)
P 		80.3
(-3)
P 		409
avr 309.3
(1) 		417.8
(3) 		393.1
(2.5) 		90.3
(-3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 167
(-3)
P 		333.1
(2.7)
P 		187.2
(-2.3)
P 		224.1
(-1)
P 		300.6
(1.6)
P 		340.5
(3)
P 		174
B 351.8
(0.4)
P 		307
(-1.2)
P 		282.8
(-2.1)
P 		257.7
(-3)
P 		391.5
(1.9)
P 		422.5
(3)
P 		165
C 346.8
(1.5)
P 		311.8
(0.6)
P 		212.5
(-2.2)
P 		182.6
(-3)
P 		316
(0.7)
P 		399.9
(3)
P 		217
avr 288.5
(-0.6) 		317.3
(0.5) 		227.5
(-2.8) 		221.5
(-3) 		336
(1.1) 		387.6
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172076_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19245
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.E NCBI
Target Description Y69A2AR.E /REP_DB=WormBase Gene ID /WP=CE26562 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067832 NCBI Caenorhabditis elegans Y69A2AR.28 (Y69A2AR.28) mRNA, complete cds. 11/11 None
SNAP00000018820 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2612547:2613054:-1 11/11 None
GENEFINDER00000018850 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2612547:2613054:-1 11/11 None
Y69A2AR.28 ENSEMBL cdna:known chromosome:CEL140:IV:2612448:2613060:-1 gene:Y69A2AR.28 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2612552-2613060(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.28
Entrez Gene 177043 Entrez gene
SwissProt Q95XH0 EMBL-EBI
WormBase CE26562 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68573 Hypothetical protein Y69A2AR.28 [Caenorhabditis elegans] ref|NP_500233.1| Y69A2AR.28 [Caenorhabditis elegans] 3.0E-40
blast CAE65569 Hypothetical protein CBG10564 [Caenorhabditis briggsae] 6.0E-29
Sequence
Target Sequence 
>C. ELEGANS:172076_X_AT
ccgcaccaagcacaccaaaacaggagcagcaggagcccgtcgaggagaaaactccgggca
gcgaggagccagaggagccacaagtcggggagaataagggaaaaactccagtggtcgtcc
cattgccccacgagacgccggcggccgtccgtaatcgtcgtcatattcaaaaggagcttc
acattggctcaccatccgacaatatgctctctccgtgtaccagcaagattttcggcaaaa
aaaacgccatctcaggcccagcggcaattctccgcagcaagcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCACCAAGCACACCAAAACAGGA 314 263 20 Antisense
AAAACAGGAGCAGCAGGAGCCCGTC 339 123 36 Antisense
AGCAGGAGCCCGTCGAGGAGAAAAC 674 77 47 Antisense
AGGAGAAAACTCCGGGCAGCGAGGA 595 55 62 Antisense
TCCGGGCAGCGAGGAGCCAGAGGAG 11 595 72 Antisense
GCCAGAGGAGCCACAAGTCGGGGAG 405 279 87 Antisense
CGTCCGTAATCGTCGTCATATTCAA 139 245 165 Antisense
AGGAGCTTCACATTGGCTCACCATC 269 55 191 Antisense
TCTCTCCGTGTACCAGCAAGATTTT 48 613 227 Antisense
GGCAAAAAAAACGCCATCTCAGGCC 680 513 253 Antisense
GCGGCAATTCTCCGCAGCAAGCAGC 661 293 280 Antisense
Sequence Source Affymetrix Proprietary Database