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[172075_x_at]

Description Y82E9BL.G /REP_DB=WormBase Gene ID /WP=CE23423 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 55      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 16.1
(-2.3)
A 		30.7
(-0.9)
A 		9.5
(-3)
A 		70.2
(3)
A 		61
B 23.9
(-0.5)
A 		41.5
(3)
A 		41.1
(2.9)
A 		11.2
(-3)
A 		30
C 6.1
(-3)
A 		11.6
(-2.6)
A 		37.7
(-0.5)
A 		80.8
(3)
A 		75
avr 15.4
(-3) 		27.9
(-1.1) 		29.4
(-0.8) 		54.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11.8
(-2)
A 		12.1
(-1.9)
A 		50.3
(3)
A 		5.9
(-2.7)
A 		3.9
(-3)
A 		12.8
(-1.8)
A 		46
B 9.4
(-1.8)
A 		13.6
(-1)
A 		17.5
(-0.2)
A 		3.5
(-3)
A 		32.5
(2.8)
A 		33.4
(3)
A 		30
C 8.2
(-2.4)
A 		11.6
(-1.9)
A 		11.3
(-2)
A 		3.8
(-3)
A 		7.4
(-2.5)
A 		47.7
(3)
A 		44
avr 9.8
(-1.8) 		12.4
(-1.2) 		26.4
(1.9) 		4.4
(-3) 		14.6
(-0.7) 		31.3
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.9
(-0.4)
A 		6.7
(0.2)
A 		2.5
(-3)
A 		10.3
(3)
A 		8
B 7.6
(0.9)
A 		10.3
(3)
A 		9.5
(2.4)
A 		2.4
(-3)
A 		8
C 2
(-3)
A 		3.3
(-2.3)
A 		13.2
(2.8)
A 		13.6
(3)
A 		12
avr 5.2
(-3) 		6.8
(-0.3) 		8.4
(2.3) 		8.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.2
(-2.4)
A 		4.3
(-1.1)
A 		10.9
(3)
A 		1.5
(-2.8)
A 		1.2
(-3)
A 		3.1
(-1.8)
A 		10
B 3.3
(-1.8)
A 		4.5
(-1.2)
A 		4.2
(-1.4)
A 		0.9
(-3)
A 		13.2
(3)
A 		12.5
(2.7)
A 		12
C 3.1
(-2.1)
A 		3.5
(-1.9)
A 		2.9
(-2.2)
A 		0.8
(-3)
A 		2.4
(-2.4)
A 		16
(3)
A 		15
avr 2.9
(-1.9) 		4.1
(-1.1) 		6
(0.1) 		1.1
(-3) 		5.6
(-0.1) 		10.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172075_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19021
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.G NCBI
Target Description Y82E9BL.G /REP_DB=WormBase Gene ID /WP=CE23423 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041770 ENSEMBL cdna:SNAP chromosome:CEL140:III:1328739:1335457:-1 10/11 None
GENEFINDER00000041778 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1333841:1335457:-1 11/11 None
Y82E9BL.9 ENSEMBL cdna:pseudogene chromosome:CEL140:III:1333911:1335457:-1 gene:Y82E9BL.9 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1333840-1334126(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y82E9BL.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94258 Hypothetical protein C14C6.12 [Caenorhabditis elegans] ref|NP_503248.2| C14C6.12 [Caenorhabditis elegans] 6.0E-43
blast AAB94258 Hypothetical protein C14C6.12 [Caenorhabditis elegans] ref|NP_503248.2| C14C6.12 [Caenorhabditis elegans] 1.0E-37
blast CAE57758 Hypothetical protein CBG00775 [Caenorhabditis briggsae] 5.0E-28
blast NP_504867 F10G2.1 [Caenorhabditis elegans] gb|AAG24056.2| Hypothetical protein F10G2.1 [Caenorhabditis elegans] 4.0E-26
blast CAE57758 Hypothetical protein CBG00775 [Caenorhabditis briggsae] 4.0E-24
blast NP_504867 F10G2.1 [Caenorhabditis elegans] gb|AAG24056.2| Hypothetical protein F10G2.1 [Caenorhabditis elegans] 8.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.8E-10
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.4E-15
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.4E-6
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.1E-17
Sequence
Target Sequence 
>C. ELEGANS:172075_X_AT
acttccagccgtgtgccaagaagttggaagcggcaaagtctgcgtgctttgcaaagtggg
atccgaatgcagttgaggctactattaaggaaaatgagacaccggcttgcgagaagtttt
acggagaaaatgattgtattaagaaggagattgcggagaagtgcagtgagaaggaatggg
atggattccgtgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCAGCCGTGTGCCAAGAAGTT 503 103 23 Antisense
GCCGTGTGCCAAGAAGTTGGAAGCG 101 285 30 Antisense
GTTGGAAGCGGCAAAGTCTGCGTGC 436 435 45 Antisense
GAAGCGGCAAAGTCTGCGTGCTTTG 572 343 49 Antisense
GTCTGCGTGCTTTGCAAAGTGGGAT 257 471 60 Antisense
GTGGGATCCGAATGCAGTTGAGGCT 135 489 78 Antisense
GAATGCAGTTGAGGCTACTATTAAG 608 329 87 Antisense
GGAAAATGAGACACCGGCTTGCGAG 198 529 111 Antisense
GACACCGGCTTGCGAGAAGTTTTAC 437 349 120 Antisense
GATTGCGGAGAAGTGCAGTGAGAAG 652 433 171 Antisense
GGAATGGGATGGATTCCGTGATTTC 704 531 195 Antisense
Sequence Source Affymetrix Proprietary Database