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[172072_x_at]

Description C04A2.7B /REP_DB=WormBase Gene ID /WP=CE01771 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 76      6grp_total > 36      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 763
1 2 3 4 range
A 1254.6
(3)
P 		917.1
(-1.3)
P 		788.1
(-3)
P 		791.6
(-3)
P 		467
B 1405.8
(3)
P 		841.5
(-3)
P 		921.7
(-2.1)
P 		901.4
(-2.4)
P 		564
C 1493.2
(3)
P 		850.7
(-2.1)
P 		835.7
(-2.2)
P 		730.5
(-3)
P 		763
avr 1384.5
(3) 		869.8
(-2.4) 		848.5
(-2.6) 		807.8
(-3) 		577

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 1111.7
(-0.5)
P 		1473.1
(3)
P 		990.1
(-1.6)
P 		847
(-3)
P 		1044
(-1.1)
P 		1366.8
(2)
P 		626
B 1511.7
(3)
P 		1249.2
(-0)
P 		1147.7
(-1.2)
P 		987.5
(-3)
P 		989
(-3)
P 		1228.4
(-0.2)
P 		524
C 1501.3
(3)
P 		1240.3
(0.4)
P 		1136.9
(-0.6)
P 		895.4
(-3)
P 		1125.8
(-0.7)
P 		1095.4
(-1)
P 		606
avr 1374.9
(3) 		1320.9
(2.3) 		1091.6
(-0.7) 		910
(-3) 		1052.9
(-1.2) 		1230.2
(1.1) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 456.8
(3)
P 		199.1
(-1.5)
P 		206
(-1.4)
P 		115.9
(-3)
P 		341
B 448.3
(3)
P 		207.8
(-2.6)
P 		213.6
(-2.5)
P 		192.1
(-3)
P 		256
C 494.3
(3)
P 		244.6
(-1)
P 		291.3
(-0.3)
P 		123.2
(-3)
P 		371
avr 466.5
(3) 		217.2
(-1.6) 		237
(-1.3) 		143.7
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 204.9
(-3)
P 		523.9
(3)
P 		215.6
(-2.8)
P 		214.8
(-2.8)
P 		315
(-0.9)
P 		332.8
(-0.6)
P 		319
B 526
(3)
P 		415.8
(0.5)
P 		278.7
(-2.6)
P 		261.6
(-3)
P 		401.8
(0.2)
P 		458.1
(1.5)
P 		264
C 556.5
(3)
P 		378.4
(0.2)
P 		289.4
(-1.3)
P 		180.1
(-3)
P 		364.3
(-0.1)
P 		366.7
(-0)
P 		376
avr 429.1
(2.7) 		439.4
(3) 		261.2
(-1.8) 		218.8
(-3) 		360.4
(0.9) 		385.9
(1.5) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172072_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4684
Sequence Type Exemplar sequence
Representative Public ID C04A2.7B NCBI
Target Description C04A2.7B /REP_DB=WormBase Gene ID /WP=CE01771 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171014(11), NM_062999(11), NM_171015(11), NM_063000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171014 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) (dnj-5) mRNA, complete cds. 11/11 A 
NM_062999 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) (dnj-5) mRNA, complete cds. 11/11 A 
NM_171015 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) (dnj-5) mRNA, complete cds. 11/11 None
NM_063000 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) (dnj-5) mRNA, complete cds. 11/11 None
SNAP00000035667 ENSEMBL cdna:SNAP chromosome:CEL140:II:6855144:6858051:-1 11/11 None
C04A2.7a ENSEMBL cdna:known chromosome:CEL140:II:6853399:6858202:-1 gene:C04A2.7 11/11 A 
C04A2.7c.1 ENSEMBL cdna:known chromosome:CEL140:II:6853399:6858218:-1 gene:C04A2.7 11/11 None
C04A2.7c.2 ENSEMBL cdna:known chromosome:CEL140:II:6853404:6858225:-1 gene:C04A2.7 11/11 None
C04A2.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:6853424:6858218:-1 gene:C04A2.7 11/11 None
C04A2.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:6853424:6858228:-1 gene:C04A2.7 11/11 None
C04A2.7d ENSEMBL cdna:known chromosome:CEL140:II:6854120:6858202:-1 gene:C04A2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6854754-6858146(-) 100.0 100.0
Public Domain and Genome References
Ensembl C04A2.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27227 Dnaj domain (prokaryotic heat shock protein) protein 5, isoform c [Caenorhabditis elegans] ref|NP_741015.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) [Caenorhabditis elegans] 0.0
blast AAL27225 Dnaj domain (prokaryotic heat shock protein) protein 5, isoform a [Caenorhabditis elegans] ref|NP_495400.2| DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) [Caenorhabditis elegans] sp|Q09446|DNJ5_CAEEL DnaJ homolog dnj-5 (DnaJ domain protein 5) 0.0
blast AAM81128 Dnaj domain (prokaryotic heat shock protein) protein 5, isoform d [Caenorhabditis elegans] ref|NP_741016.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) [Caenorhabditis elegans] 0.0
blast AAL27226 Dnaj domain (prokaryotic heat shock protein) protein 5, isoform b [Caenorhabditis elegans] ref|NP_495401.2| DNaJ domain (prokaryotic heat shock protein) family member (dnj-5) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 2.00000002337219E-7
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.0000000116861E-7
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.5E-12
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.5E-12
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741015.1 2 543-565,586-605
NP_495400.2 2 544-566,587-606
NP_741016.1 2 544-566,587-606
NP_495401.2 2 544-566,587-606
C04A2.7a 2 544-566,587-606
C04A2.7c.1 2 543-565,586-605
C04A2.7c.2 2 543-565,586-605
C04A2.7b.1 2 544-566,587-606
C04A2.7b.2 2 544-566,587-606
C04A2.7d 2 544-566,587-606
SNAP00000035667 2 508-530,551-570
Sequence
Target Sequence 
>C. ELEGANS:172072_X_AT
atgcaaccgaattcgctgatcgtttatcgagagagactattcgtgatgcgtattcagtgt
ttggattgagaagcgattgttctgatgatgacatcaaaagaaactataagcgattggctg
ctcttgtctcaccagataagtgcacaattgatgctgccgaccaagtttatgagcttgttg
atgttgccttctcagctattggttacaaggattctcgatctgagtataccctcgaaaatc
ttaagaacaacgaagtgcatgagcaattgatctctgtttggaatgatatgacaaaagctg
tcgaagaggcacgaaacactatcttctgtgattgtgaaaacactcatttccgtgttgcca
cttctatttctccatctcaagcaagaagttgtaagagatgtggagtaaagcatcctgcca
agcagaatgatatttgggttgagaagagacatctcggattgacttctacctattacacgt
gcacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAACCGAATTCGCTGATCGTTT 102 43 1652 Antisense
ATAAGCGATTGGCTGCTCTTGTCTC 619 25 1757 Antisense
GCACAATTGATGCTGCCGACCAAGT 40 317 1793 Antisense
ATGAGCTTGTTGATGTTGCCTTCTC 583 45 1820 Antisense
GTTGCCTTCTCAGCTATTGGTTACA 680 439 1834 Antisense
GATTCTCGATCTGAGTATACCCTCG 80 431 1861 Antisense
GAGGCACGAAACACTATCTTCTGTG 150 405 1957 Antisense
AAACACTCATTTCCGTGTTGCCACT 355 129 1989 Antisense
CTTCTATTTCTCCATCTCAAGCAAG 301 221 2012 Antisense
GAGACATCTCGGATTGACTTCTACC 430 393 2097 Antisense
ACTTCTACCTATTACACGTGCACAG 346 103 2113 Antisense
Sequence Source Affymetrix Proprietary Database