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[172071_x_at]

Description Y22D7AR.B /REP_DB=WormBase Gene ID /WP=CE23410 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 11      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 46.3
(-2.8)
A 		53.1
(-2.2)
A 		44.5
(-3)
A 		111.9
(3)
A 		67
B 99.9
(1.3)
A 		64.7
(-3)
A 		72.7
(-2)
A 		114
(3)
A 		49
C 57.7
(-2.6)
A 		106
(3)
A 		54
(-3)
A 		95.7
(1.8)
A 		52
avr 68
(-1.7) 		74.6
(-0.9) 		57.1
(-3) 		107.2
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 97.8
(2.7)
A 		57.7
(0.3)
A 		4.6
(-3)
A 		44.4
(-0.6)
A 		102.2
(3)
A 		52.9
(-0)
A 		98
B 5.9
(-3)
A 		51.4
(0.1)
A 		95
(3)
A 		71.8
(1.4)
A 		35.4
(-1)
A 		26.2
(-1.6)
A 		89
C 34.1
(-0.6)
A 		71
(2.9)
A 		72.1
(3)
A 		9.2
(-3)
A 		39.4
(-0.1)
A 		25.4
(-1.5)
A 		63
avr 45.9
(-0.4) 		60
(3) 		57.2
(2.3) 		41.8
(-1.3) 		59
(2.8) 		34.8
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.9
(3)
A 		11.5
(-3)
A 		11.6
(-2.9)
A 		16.4
(2.4)
A 		5
B 31.8
(3)
A 		16
(-3)
A 		16.8
(-2.7)
A 		24.3
(0.2)
A 		16
C 19.1
(-1.8)
A 		30.5
(3)
A 		18.8
(-1.9)
A 		16.1
(-3)
A 		14
avr 22.6
(3) 		19.3
(0.1) 		15.7
(-3) 		18.9
(-0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18
(0.4)
A 		20.5
(0.9)
A 		1
(-3)
A 		11.3
(-0.9)
A 		30.8
(3)
A 		12.9
(-0.6)
A 		30
B 2.1
(-3)
A 		17.1
(1.3)
A 		23.1
(3)
A 		19
(1.8)
A 		14.4
(0.5)
A 		9.8
(-0.8)
A 		21
C 12.6
(0.3)
A 		21.7
(3)
A 		18.4
(2)
A 		1.8
(-3)
A 		12.7
(0.3)
A 		8.5
(-1)
A 		20
avr 10.9
(-2.7) 		19.8
(3) 		14.2
(-0.6) 		10.7
(-2.8) 		19.3
(2.7) 		10.4
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172071_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19061
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.B NCBI
Target Description Y22D7AR.B /REP_DB=WormBase Gene ID /WP=CE23410 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y22D7AR.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AR.B Y22D7AR.B /REP_DB=WormBase Gene ID /WP=CE23410 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062119 1/11 Cross Hyb Matching Probes A 
NM_075936 1/11 Cross Hyb Matching Probes A 
NM_065049 2/11 Cross Hyb Matching Probes A 
NM_065155 1/11 Cross Hyb Matching Probes A 
NM_061102 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000000437 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034285 1/11 Cross Hyb Matching Probes None
GENEFINDER00000032473 1/11 Cross Hyb Matching Probes None
GENEFINDER00000038965 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020197 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025842 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001629 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005542 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011970 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029489 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040405 1/11 Cross Hyb Matching Probes None
F49B2.6 1/11 Cross Hyb Matching Probes A 
F34D6.1 1/11 Cross Hyb Matching Probes None
Y49F6C.7 1/11 Cross Hyb Matching Probes A 
Y22D7AR.1 2/11 Cross Hyb Matching Probes A 
E02H9.6 1/11 Cross Hyb Matching Probes A 
Y73F8A.4 1/11 Cross Hyb Matching Probes None
T26C11.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1719026-1719173(-) 19.05 100.0
Sequence
Target Sequence 
>C. ELEGANS:172071_X_AT
atgagcgacatgatttctagcttaagtctaggcctaagccgacttgaccctaagcttaaa
cttaagcctaagcctaagcctaagcctaagcctaagactaagactatgcctaagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCGACATGATTTCTAGCTTAA 311 45 13 Antisense
GATTTCTAGCTTAAGTCTAGGCCTA 587 403 24 Antisense
AGTCTAGGCCTAAGCCGACTTGACC 687 59 37 Antisense
TCTAGGCCTAAGCCGACTTGACCCT 341 613 39 Antisense
TAAGCCGACTTGACCCTAAGCTTAA 587 635 47 Antisense
TGACCCTAAGCTTAAACTTAAGCCT 602 531 57 Antisense
TTAAGCCTAAGCCTAAGCCTAAGCC 330 637 74 Antisense
AAGCCTAAGCCTAAGCCTAAGCCTA 251 149 82 Antisense
AAGCCTAAGCCTAAGCCTAAGACTA 250 149 88 Antisense
AAGCCTAAGACTAAGACTATGCCTA 136 149 100 Antisense
TAAGACTAAGACTATGCCTAAGCCT 392 637 105 Antisense
Sequence Source Affymetrix Proprietary Database