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[172070_x_at]

Description K06A9.1B /REP_DB=WormBase Gene ID /WP=CE19525 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 581.1
(3)
P 		370.5
(-1.3)
P 		354.3
(-1.7)
P 		289.3
(-3)
P 		292
B 541.5
(3)
P 		404.7
(-0.1)
P 		390.7
(-0.4)
P 		275.7
(-3)
P 		266
C 564.4
(3)
P 		388.6
(0.1)
P 		338.6
(-0.7)
P 		201.9
(-3)
P 		363
avr 562.3
(3) 		387.9
(-0.4) 		361.2
(-0.9) 		255.6
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 582
1 2 3 4 5 6 range
A 562.1
(3)
P 		398.1
(0.4)
P 		233.3
(-2.2)
P 		179.6
(-3)
P 		301.9
(-1.1)
P 		282.7
(-1.4)
P 		383
B 503.6
(3)
P 		441.4
(1.8)
P 		259.2
(-1.7)
P 		249.2
(-1.9)
P 		233.5
(-2.2)
P 		190.1
(-3)
P 		314
C 746.3
(3)
P 		420.1
(-0.4)
P 		343
(-1.2)
P 		164.7
(-3)
P 		382.7
(-0.8)
P 		206.3
(-2.6)
P 		582
avr 604
(3) 		419.9
(0.3) 		278.5
(-1.8) 		197.8
(-3) 		306
(-1.4) 		226.4
(-2.6) 		406
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 211.6
(3)
P 		80.4
(-1.7)
P 		92.6
(-1.2)
P 		42.4
(-3)
P 		169
B 172.7
(3)
P 		100
(-0.8)
P 		90.5
(-1.3)
P 		58.7
(-3)
P 		114
C 186.8
(3)
P 		111.7
(0.1)
P 		118
(0.3)
P 		34
(-3)
P 		153
avr 190.4
(3) 		97.4
(-0.8) 		100.4
(-0.7) 		45
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 103.6
(0.6)
P 		141.6
(3)
P 		50.8
(-2.7)
P 		45.6
(-3)
P 		91.1
(-0.2)
P 		68.8
(-1.6)
P 		96
B 175.2
(3)
P 		146.9
(1.5)
P 		62.9
(-3)
P 		66
(-2.8)
P 		94.9
(-1.3)
P 		70.9
(-2.6)
P 		112
C 276.6
(3)
P 		128.2
(-0.7)
P 		87.3
(-1.7)
P 		33.1
(-3)
P 		123.8
(-0.8)
P 		69
(-2.1)
P 		244
avr 185.1
(3) 		138.9
(1) 		67
(-2.2) 		48.2
(-3) 		103.3
(-0.6) 		69.6
(-2.1) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172070_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18577
Sequence Type Exemplar sequence
Representative Public ID K06A9.1B NCBI
Target Description K06A9.1B /REP_DB=WormBase Gene ID /WP=CE19525 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075891(11), NM_075892(10), NM_001029593(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075891 NCBI Caenorhabditis elegans K06A9.1b (K06A9.1) mRNA, complete cds. 11/11 A 
NM_075892 NCBI Caenorhabditis elegans K06A9.1a (K06A9.1) mRNA, complete cds. 10/11 A 
NM_001029593 NCBI Caenorhabditis elegans K06A9.1c (K06A9.1) mRNA, complete cds. 10/11 None
GENEFINDER00000039861 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1557259:1559872:1 9/11 None
SNAP00000039855 ENSEMBL cdna:SNAP chromosome:CEL140:X:1558440:1561317:1 10/11 None
K06A9.1b ENSEMBL cdna:known chromosome:CEL140:X:1547504:1560119:1 gene:K06A9.1 11/11 A 
K06A9.1a ENSEMBL cdna:known chromosome:CEL140:X:1547504:1559723:1 gene:K06A9.1 10/11 A 
K06A9.1c ENSEMBL cdna:known chromosome:CEL140:X:1549442:1559723:1 gene:K06A9.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1547503-1559723(+) 100.0 100.0
Public Domain and Genome References
Ensembl K06A9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70890 Hypothetical protein K06A9.1b [Caenorhabditis elegans] ref|NP_508292.1| K06A9.1b [Caenorhabditis elegans] 1.0E-106
blast AAP82647 Hypothetical protein K06A9.1c [Caenorhabditis elegans] ref|NP_001024764.1| K06A9.1c [Caenorhabditis elegans] 1.0E-101
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-101
blast AAP82647 Hypothetical protein K06A9.1c [Caenorhabditis elegans] ref|NP_001024764.1| K06A9.1c [Caenorhabditis elegans] 1.0E-100
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508292.1 1 7-29
NP_508293.1 1 7-29
K06A9.1b 1 7-29
K06A9.1a 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172070_X_AT
gttcaagaggttcatcactcgccacaacttccgcgccaaaacccagtgtgacttgtctgt
tcatgtacgatacacaatccaaagaaatagatcaaacagctataaacacgtataaaactt
atttcaatttcgctctactggttgcttccaaattgaacaatgaatcaattttgactggat
acatcgataacttcggatacagtgctgggttgaatgatcatcaatattaccctactgacg
actacaatggtattaagtctgtacctttcccaattgatggcactgatgacgacattgatc
ttgatttgaaagatgtcgacaaaagtttggcaacagcagattggacaccaccagtggctg
accaaacctgcatgattttcatttctgctgcaccagaagatgagtatgggggcactacta
taaaatcgacttatacttacttcgagacagtcgttggagttcttgttggaggagctaaaa
gtataccgggactttcaattgacaaaaatatagttatcacgaacaatacaatgaacgacc
gtgacgctagtgcagttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAGAGGTTCATCACTCGCCAC 675 445 6119 Antisense
GCGCCAAAACCCAGTGTGACTTGTC 94 287 6151 Antisense
GTGACTTGTCTGTTCATGTACGATA 479 481 6166 Antisense
AACTTATTTCAATTTCGCTCTACTG 229 139 6234 Antisense
CGCTCTACTGGTTGCTTCCAAATTG 636 255 6249 Antisense
AATATTACCCTACTGACGACTACAA 631 163 6341 Antisense
GTCTGTACCTTTCCCAATTGATGGC 321 471 6375 Antisense
AGCAGATTGGACACCACCAGTGGCT 60 79 6453 Antisense
CCAGTGGCTGACCAAACCTGCATGA 12 271 6469 Antisense
GCATGATTTTCATTTCTGCTGCACC 239 311 6488 Antisense
ACGACCGTGACGCTAGTGCAGTTGT 214 91 6653 Antisense
Sequence Source Affymetrix Proprietary Database