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[172062_x_at]

Description g3452400 /REP_DB=GenBank Identifier /GB=AF083647.1 /PROTEIN_GB=AAC32858.1 /CHR=X /FEA=Mapped Transcript /DEF=putative potassium channel subunit n2P17m2-2
Cluster 6grp_high1_10_10 > 15      6grp_total > 05      4grp_total > 22      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 164.3
(1.1)
P 		111
(-1.1)
M 		66
(-3)
A 		209.9
(3)
A 		144
B 164
(3)
P 		94.1
(-1.8)
M 		76.6
(-3)
A 		119.2
(-0.1)
A 		87
C 171.8
(3)
P 		105
(-0.6)
A 		60.4
(-3)
A 		166.7
(2.7)
M 		111
avr 166.7
(3) 		103.4
(-0.8) 		67.7
(-3) 		165.3
(2.9) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 174.8
(3)
P 		157.7
(1.6)
P 		111.9
(-2.2)
A 		101.9
(-3)
P 		103.4
(-2.9)
A 		106.9
(-2.6)
A 		73
B 161
(3)
A 		150.7
(2.3)
P 		85.7
(-2.3)
A 		125
(0.5)
P 		114.1
(-0.3)
P 		75.9
(-3)
P 		85
C 190.4
(3)
P 		178.9
(2.4)
P 		96.3
(-1.9)
P 		94.1
(-2.1)
P 		107.7
(-1.3)
A 		76.1
(-3)
P 		114
avr 175.4
(3) 		162.4
(2.1) 		98
(-2.2) 		107
(-1.6) 		108.4
(-1.5) 		86.3
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 59.8
(3)
P 		24.1
(-2)
M 		17.2
(-3)
A 		30.7
(-1.1)
A 		43
B 52.3
(3)
P 		23.3
(-2)
M 		17.8
(-3)
A 		25.4
(-1.7)
A 		35
C 56.9
(3)
P 		30.2
(-1.5)
A 		21
(-3)
A 		28.1
(-1.8)
M 		36
avr 56.3
(3) 		25.9
(-1.9) 		18.7
(-3) 		28.1
(-1.5) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 32.2
(-1.5)
P 		56.1
(3)
P 		24.4
(-3)
A 		25.8
(-2.7)
P 		31.2
(-1.7)
A 		26
(-2.7)
A 		32
B 56
(3)
A 		50.2
(2)
P 		20.8
(-3)
A 		33.1
(-0.9)
P 		46.4
(1.4)
P 		28.3
(-1.7)
P 		35
C 70.6
(3)
P 		54.6
(1.1)
P 		24.5
(-2.4)
P 		18.9
(-3)
P 		34.9
(-1.1)
A 		25.5
(-2.2)
P 		52
avr 52.9
(2.9) 		53.6
(3) 		23.2
(-3) 		25.9
(-2.5) 		37.5
(-0.2) 		26.6
(-2.3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172062_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19952
Sequence Type Exemplar sequence
Representative Public ID 3452400 NCBI
Target Description g3452400 /REP_DB=GenBank Identifier /GB=AF083647.1 /PROTEIN_GB=AAC32858.1 /CHR=X /FEA=Mapped Transcript /DEF=putative potassium channel subunit n2P17m2-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029294(11), NM_001029296(11), NM_001029292(11), NM_001029293(11), NM_001029291(11), NM_001029295(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029294 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029296 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029292 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029293 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029291 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 11/11 None
NM_001029295 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-17) (twk-17) mRNA, complete cds. 10/11 None
SNAP00000016789 ENSEMBL cdna:SNAP chromosome:CEL140:X:7600307:7603348:-1 11/11 None
GENEFINDER00000016791 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7600307:7606584:-1 11/11 None
C44E12.3d ENSEMBL cdna:known chromosome:CEL140:X:7599778:7606338:-1 gene:C44E12.3 11/11 A 
C44E12.3e ENSEMBL cdna:known chromosome:CEL140:X:7599810:7606338:-1 gene:C44E12.3 11/11 A 
C44E12.3f ENSEMBL cdna:known chromosome:CEL140:X:7600307:7607948:-1 gene:C44E12.3 11/11 None
C44E12.3c ENSEMBL cdna:known chromosome:CEL140:X:7600307:7606338:-1 gene:C44E12.3 11/11 A 
C44E12.3a ENSEMBL cdna:known chromosome:CEL140:X:7600307:7604350:-1 gene:C44E12.3 11/11 A 
C44E12.3b ENSEMBL cdna:known chromosome:CEL140:X:7600307:7607948:-1 gene:C44E12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7600305-7606337(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44E12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51532 Twik family of potassium channels protein 17, isoform d [Caenorhabditis elegans] ref|NP_001024465.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32862.1| putative potassium channel subunit n2P17m2-1 [Caenorhabditis elegans] 0.0
blast AAM51531 Twik family of potassium channels protein 17, isoform c [Caenorhabditis elegans] ref|NP_001024464.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32858.1| putative potassium channel subunit n2P17m2-2 [Caenorhabditis elegans] 0.0
blast AAP31441 Twik family of potassium channels protein 17, isoform e [Caenorhabditis elegans] ref|NP_001024466.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32859.1| putative potassium channel subunit n2P17m2-3 [Caenorhabditis elegans] 0.0
blast AAW30673 Twik family of potassium channels protein 17, isoform f [Caenorhabditis elegans] ref|NP_001024467.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32854.1| putative potassium channel subunit n2P17m1-2 [Caenorhabditis elegans] 0.0
blast AAM51530 Twik family of potassium channels protein 17, isoform b [Caenorhabditis elegans] ref|NP_001024463.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] gb|AAC32855.1| putative potassium channel subunit n2P17m1-1 [Caenorhabditis elegans] 0.0
blast AAM51529 Twik family of potassium channels protein 17, isoform a [Caenorhabditis elegans] ref|NP_001024462.1| TWiK family of potassium channels family member (twk-17) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024465.1 6 142-164,243-265,275-297,365-387,392-414,421-440
NP_001024467.1 6 78-100,179-201,211-233,301-323,328-350,357-376
NP_001024463.1 6 78-100,179-201,211-233,301-323,328-350,357-376
NP_001024464.1 6 142-164,243-265,275-297,365-387,392-414,421-440
NP_001024462.1 6 85-107,186-208,218-240,308-330,335-357,364-383
NP_001024466.1 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3d 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3e 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3f 6 78-100,179-201,211-233,301-323,328-350,357-376
C44E12.3c 6 142-164,243-265,275-297,365-387,392-414,421-440
C44E12.3a 6 85-107,186-208,218-240,308-330,335-357,364-383
C44E12.3b 6 78-100,179-201,211-233,301-323,328-350,357-376
SNAP00000016789 5 88-110,125-147,176-198,203-225,232-251
GENEFINDER00000016791 6 224-246,325-347,357-379,447-469,474-496,595-617
Sequence
Target Sequence 
>C. ELEGANS:172062_X_AT
cgtatggtcattcattcacggcgtcttcttctcattcaataccatcacaacaattggatt
gggaaatattcgagttcagcagcactactaccttgcactcgcggtatcttatgtaattat
cggtcttgctgtcatcactgcatcactggatctctgttcctctacactgaaacgaacatt
taccaaacttcactactttggaagaaagattcgtggtgctcgacgtggttttgcaaatat
gagcgatgacatccgagaagcaatgcgaataattgctgcgttgaaaaagacaaggccatc
gaaagatcgaataactttggaagacttgaagcggttccttgaagttcaggagcatctgct
ccgacaaccatatgtcccttataacgttcacctccttcgatggatcgaagacaatgttgg
tccacagatgaaaaatgagttttccctagcagaacaatatgcacaatacatggatgatgt
ctctggaggtaaaacaccaatgtccccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTATGGTCATTCATTCACGGCGTC 278 245 1185 Antisense
TCTTCTTCTCATTCAATACCATCAC 395 617 1208 Antisense
ATTCGAGTTCAGCAGCACTACTACC 238 7 1252 Antisense
CTTGCACTCGCGGTATCTTATGTAA 577 217 1276 Antisense
TAATTATCGGTCTTGCTGTCATCAC 252 635 1298 Antisense
ATCACTGCATCACTGGATCTCTGTT 97 29 1318 Antisense
TCTCTGTTCCTCTACACTGAAACGA 601 611 1335 Antisense
AAGATTCGTGGTGCTCGACGTGGTT 337 155 1390 Antisense
GCATCTGCTCCGACAACCATATGTC 643 309 1536 Antisense
CATATGTCCCTTATAACGTTCACCT 143 215 1553 Antisense
GAGGTAAAACACCAATGTCCCCATC 486 401 1670 Antisense
Sequence Source GenBank