[Home] | [Total List]

[172054_at]

Description F07B7.G /REP_DB=WormBase Gene ID /WP=CE25845 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 21.3
(-1.2)
A 		27.6
(-0.3)
A 		7.6
(-3)
A 		52.6
(3)
A 		45
B 29.1
(2.3)
A 		6.6
(-2.4)
A 		32.5
(3)
A 		3.9
(-3)
A 		29
C 7
(-2.2)
A 		37.7
(3)
A 		2.1
(-3)
A 		5.4
(-2.4)
A 		36
avr 19.1
(0) 		24
(3) 		14.1
(-3) 		20.6
(0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 50.7
(3)
A 		31.9
(0.4)
A 		7.6
(-3)
A 		26.2
(-0.4)
A 		19.2
(-1.4)
A 		7.3
(-3)
A 		43
B 13.8
(-1.9)
A 		5.8
(-2.9)
A 		54.7
(3)
A 		5.2
(-3)
A 		4.8
(-3)
A 		19.8
(-1.2)
A 		50
C 41.4
(3)
A 		4.1
(-2.6)
A 		8.7
(-1.9)
A 		6.9
(-2.2)
A 		5.6
(-2.4)
A 		1.6
(-3)
A 		40
avr 35.3
(3) 		13.9
(-2) 		23.7
(0.3) 		12.8
(-2.3) 		9.9
(-2.9) 		9.6
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.7
(3)
A 		6
(1.2)
A 		2
(-3)
A 		7.7
(3)
A 		6
B 9.3
(3)
A 		1.6
(-2.4)
A 		7.5
(1.7)
A 		0.8
(-3)
A 		9
C 2.3
(-2.1)
A 		10.9
(3)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		10
avr 6.4
(3) 		6.2
(2.6) 		3.4
(-2.5) 		3.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.3
(1.8)
A 		11.3
(3)
A 		1.7
(-3)
A 		6.7
(0.1)
A 		5.8
(-0.4)
A 		1.8
(-2.9)
A 		10
B 4.8
(-1.3)
A 		1.9
(-2.7)
A 		13.3
(3)
A 		1.4
(-3)
A 		2
(-2.7)
A 		7.4
(0)
A 		12
C 15.3
(3)
A 		1.3
(-2.7)
A 		2.2
(-2.3)
A 		1.4
(-2.6)
A 		1.8
(-2.5)
A 		0.5
(-3)
A 		15
avr 9.8
(3) 		4.8
(-1.5) 		5.7
(-0.7) 		3.2
(-3) 		3.2
(-3) 		3.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19402
Sequence Type Exemplar sequence
Representative Public ID F07B7.G NCBI
Target Description F07B7.G /REP_DB=WormBase Gene ID /WP=CE25845 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010868 ENSEMBL cdna:SNAP chromosome:CEL140:V:8879713:8880166:1 9/11 None
SNAP00000015084 ENSEMBL cdna:SNAP chromosome:CEL140:V:8837619:8838072:1 9/11 None
GENEFINDER00000015141 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8837341:8844972:1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8879743-8879947(+) 100.0 100.0
chrV:8837649-8837853(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Sequence
Target Sequence 
>C. ELEGANS:172054_AT
agagaacaacaacctgatgtaccacccgctgaaccggctaatgatgtagtcgcaccacca
ccactcatggatctcggaccacccgtgaacccaatgctaccattggacctgccttataac
gtagtgagagagattggaatcgctgtaagtagcaaaatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGAACAACAACCTGATGTACCAC 405 67 16 Antisense
CCACCCGCTGAACCGGCTAATGATG 275 273 37 Antisense
GAACCGGCTAATGATGTAGTCGCAC 243 347 46 Antisense
GGCTAATGATGTAGTCGCACCACCA 6 537 51 Antisense
CCCGTGAACCCAATGCTACCATTGG 289 233 97 Antisense
CTACCATTGGACCTGCCTTATAACG 642 223 112 Antisense
CATTGGACCTGCCTTATAACGTAGT 333 213 116 Antisense
GGACCTGCCTTATAACGTAGTGAGA 348 521 120 Antisense
ACGTAGTGAGAGAGATTGGAATCGC 129 55 134 Antisense
AGAGATTGGAATCGCTGTAAGTAGC 68 55 144 Antisense
AATCGCTGTAAGTAGCAAAATCACA 262 169 153 Antisense
Sequence Source Affymetrix Proprietary Database