[Home] | [Total List]

[172053_x_at]

Description ZK105.G /REP_DB=WormBase Gene ID /WP=CE23452 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_high_8_8 > 05      6grp_highest_nonorm > 33      6grp_total > 20      4grp_total > 03      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14408
1 2 3 4 range
A 1921.4
(-2.5)
P 		693.8
(-3)
P 		757
(-3)
P 		14755.7
(3)
P 		14062
B 3178.3
(0.3)
P 		1275.1
(-2.5)
P 		974.9
(-3)
P 		4940.3
(3)
P 		3965
C 2717.2
(-1.9)
P 		731.5
(-2.8)
A 		347.8
(-3)
P 		12838
(3)
P 		12490
avr 2605.6
(-1.9) 		900.1
(-2.9) 		693.2
(-3) 		10844.7
(3) 		10152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5688
1 2 3 4 5 6 range
A 1226.2
(-1.9)
P 		913.5
(-2.2)
P 		5729.9
(3)
P 		398.6
(-2.8)
P 		2369.4
(-0.7)
P 		218.3
(-3)
P 		5512
B 1814.1
(0.4)
P 		2711.6
(3)
P 		1831.1
(0.4)
P 		925.1
(-2.2)
P 		1062.7
(-1.8)
P 		655.1
(-3)
P 		2057
C 515.8
(-2.7)
P 		5905.8
(3)
P 		489.6
(-2.8)
P 		1341.2
(-1.9)
P 		276.4
(-3)
P 		717
(-2.5)
P 		5629
avr 1185.4
(-1.5) 		3177
(3) 		2683.5
(1.9) 		888.3
(-2.2) 		1236.2
(-1.4) 		530.1
(-3) 		2647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2044
1 2 3 4 range
A 699.6
(-1.4)
P 		150.6
(-3)
P 		197.9
(-2.9)
P 		2159.9
(3)
P 		2009
B 1013.5
(2.7)
P 		314.9
(-2.4)
P 		225.9
(-3)
P 		1052.8
(3)
P 		827
C 899.5
(-0.7)
P 		210.3
(-2.7)
A 		121.2
(-3)
P 		2164.7
(3)
P 		2044
avr 870.9
(-0.4) 		225.3
(-2.8) 		181.7
(-3) 		1792.5
(3) 		1611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1749
1 2 3 4 5 6 range
A 226
(-2.1)
P 		324.9
(-1.6)
P 		1247.9
(3)
P 		101.1
(-2.8)
P 		715
(0.3)
P 		53.1
(-3)
P 		1195
B 631.2
(0.5)
P 		902.6
(3)
P 		444.6
(-1.2)
P 		245
(-3)
P 		431.8
(-1.3)
P 		244.3
(-3)
P 		658
C 191.2
(-2.6)
P 		1802
(3)
P 		124.6
(-2.9)
P 		269.7
(-2.4)
P 		89.4
(-3)
P 		240
(-2.5)
P 		1713
avr 349.5
(-1.8) 		1009.8
(3) 		605.7
(0.1) 		205.3
(-2.8) 		412.1
(-1.3) 		179.1
(-3) 		831
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172053_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19418
Sequence Type Exemplar sequence
Representative Public ID ZK105.G NCBI
Target Description ZK105.G /REP_DB=WormBase Gene ID /WP=CE23452 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZK105.G
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK105.G ZK105.G /REP_DB=WormBase Gene ID /WP=CE23452 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065168 1/11 Cross Hyb Matching Probes A 
SNAP00000010958 4/11 Cross Hyb Matching Probes None
GENEFINDER00000002760 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029225 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037591 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029150 5/11 Cross Hyb Matching Probes None
SNAP00000003365 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003374 2/11 Cross Hyb Matching Probes None
SNAP00000017447 5/11 Cross Hyb Matching Probes None
GENEFINDER00000017471 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021430 4/11 Cross Hyb Matching Probes None
SNAP00000021879 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024356 1/11 Cross Hyb Matching Probes None
SNAP00000029285 1/11 Cross Hyb Matching Probes None
SNAP00000029286 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 1/11 Cross Hyb Matching Probes None
SNAP00000042947 3/11 Cross Hyb Matching Probes None
GENEFINDER00000042954 3/11 Cross Hyb Matching Probes None
SNAP00000013903 1/11 Cross Hyb Matching Probes None
SNAP00000031960 5/11 Cross Hyb Matching Probes None
GENEFINDER00000031976 5/11 Cross Hyb Matching Probes None
SNAP00000001448 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001469 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019412 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026632 8/11 Cross Hyb Matching Probes None
SNAP00000030920 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030940 4/11 Cross Hyb Matching Probes None
GENEFINDER00000033793 1/11 Cross Hyb Matching Probes None
SNAP00000037535 5/11 Cross Hyb Matching Probes None
GENEFINDER00000037541 5/11 Cross Hyb Matching Probes None
SNAP00000014726 1/11 Cross Hyb Matching Probes None
SNAP00000028756 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028763 1/11 Cross Hyb Matching Probes None
SNAP00000006574 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031395 1/11 Cross Hyb Matching Probes None
SNAP00000031393 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039281 1/11 Cross Hyb Matching Probes None
SNAP00000032586 1/11 Cross Hyb Matching Probes None
GENEFINDER00000032588 1/11 Cross Hyb Matching Probes None
Y54F10AM.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172053_X_AT
cgatgggtctcaccacgaagggtatcaccacgaagggtctcaccacgatgggtctcacca
cgaagggtgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATGGGTCTCACCACGAAGGGTAT 700 247 86 Antisense
GGGTCTCACCACGAAGGGTATCACC 431 497 90 Antisense
GTCTCACCACGAAGGGTATCACCAC 119 471 92 Antisense
CTCACCACGAAGGGTATCACCACGA 482 227 94 Antisense
ACCACGAAGGGTATCACCACGAAGG 383 1 97 Antisense
GAAGGGTATCACCACGAAGGGTCTC 583 333 102 Antisense
AGGGTATCACCACGAAGGGTCTCAC 516 57 104 Antisense
GGTATCACCACGAAGGGTCTCACCA 6 505 106 Antisense
ACGATGGGTCTCACCACGAAGGGTG 678 93 130 Antisense
GATGGGTCTCACCACGAAGGGTGCC 210 409 132 Antisense
TGGGTCTCACCACGAAGGGTGCCAC 570 553 134 Antisense
Sequence Source Affymetrix Proprietary Database