[Home] | [Total List]

[172052_x_at]

Description F07B7.J /REP_DB=WormBase Gene ID /WP=CE25847 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 28      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 13.2
(2.8)
A 		13.6
(3)
A 		10.7
(1.4)
A 		2.9
(-3)
A 		11
B 15.6
(-2)
A 		65
(3)
A 		5.7
(-3)
A 		30.9
(-0.5)
A 		59
C 51.2
(3)
A 		27.5
(-0.5)
A 		11
(-3)
A 		33.2
(0.3)
A 		40
avr 26.7
(1) 		35.4
(3) 		9.1
(-3) 		22.3
(0) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 66.7
(3)
A 		60.9
(2.4)
A 		6.8
(-3)
A 		8.1
(-2.9)
A 		54.6
(1.8)
A 		12.4
(-2.4)
A 		60
B 38.1
(3)
A 		7.5
(-2.4)
A 		21.9
(0.1)
A 		6.4
(-2.6)
A 		12.8
(-1.5)
A 		4.2
(-3)
A 		34
C 5
(-3)
A 		7.8
(-2.4)
A 		6.8
(-2.6)
A 		8.6
(-2.3)
A 		7.7
(-2.5)
A 		35
(3)
A 		30
avr 36.6
(3) 		25.4
(0.7) 		11.8
(-2.1) 		7.7
(-3) 		25
(0.6) 		17.2
(-1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.8
(3)
A 		3
(0.5)
A 		2.8
(0.3)
A 		0.4
(-3)
A 		4
B 5
(-1.5)
A 		16
(3)
A 		1.3
(-3)
A 		6.6
(-0.8)
A 		15
C 16.9
(3)
A 		7.9
(-1.1)
A 		3.8
(-3)
A 		5.6
(-2.2)
A 		13
avr 8.9
(2.9) 		9
(3) 		2.6
(-3) 		4.2
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.3
(0.2)
A 		21.6
(3)
A 		1.5
(-3)
A 		2
(-2.9)
A 		16.5
(1.5)
A 		3
(-2.6)
A 		20
B 13.3
(3)
A 		2.5
(-2.5)
A 		5.3
(-1.1)
A 		1.7
(-2.9)
A 		5.2
(-1.2)
A 		1.6
(-3)
A 		12
C 1.8
(-2.9)
A 		2.4
(-2.6)
A 		1.7
(-3)
A 		1.7
(-3)
A 		2.5
(-2.5)
A 		11.7
(3)
A 		10
avr 9.1
(3) 		8.8
(2.8) 		2.8
(-2.2) 		1.8
(-3) 		8.1
(2.2) 		5.4
(-0) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172052_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19416
Sequence Type Exemplar sequence
Representative Public ID F07B7.J NCBI
Target Description F07B7.J /REP_DB=WormBase Gene ID /WP=CE25847 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072872(11), NM_072887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072872 NCBI Caenorhabditis elegans F07B7.6 (F07B7.6) mRNA, complete cds. 11/11 A 
NM_072887 NCBI Caenorhabditis elegans K06C4.15 (K06C4.15) mRNA, complete cds. 11/11 A 
SNAP00000015088 ENSEMBL cdna:SNAP chromosome:CEL140:V:8844397:8844972:1 11/11 None
GENEFINDER00000015141 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8837341:8844972:1 11/11 None
SNAP00000018179 ENSEMBL cdna:SNAP chromosome:CEL140:V:8884794:8887067:1 10/11 None
GENEFINDER00000018194 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8882251:8887067:1 10/11 None
F07B7.6 ENSEMBL cdna:known chromosome:CEL140:V:8840139:8847426:1 gene:F07B7.6 11/11 A 
K06C4.15 ENSEMBL cdna:known chromosome:CEL140:V:8882251:8887067:1 gene:K06C4.15 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026848 4/11 Cross Hyb Matching Probes None
GENEFINDER00000026853 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl F07B7.6
K06C4.15
Entrez Gene 184114 Entrez gene
187067 Entrez gene
SwissProt Q965Z1 EMBL-EBI
Q9GYH6 EMBL-EBI
WormBase CE26802 Wormbase
CE11826 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
blast T27790 hypothetical protein ZK228.2 - Caenorhabditis elegans 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast AAF98232 Hypothetical protein K06C4.15 [Caenorhabditis elegans] ref|NP_505288.1| K06C4.15 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.0E-19
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.4E-88
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.036
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 2.2E-95
Sequence
Target Sequence 
>C. ELEGANS:172052_X_AT
ggaattcaagcccagacgcagatacttacaccatcaaaatcgccgatgtccaaaccatta
tgcatcccaccaaaagagacgttgcttctaaaatggctgaaacctttgacccattgggac
taatctcaccgattcaagtcttaatgaaaaggtttattcaaaagcacgaattactgatct
tctcggacgcttctcaagacatctatgcagcagccgcttacgcctacttctcatatggtg
acgatagacctccagtgatctccttgatcacaagcaagaataagattaagccatccaagg
agaccaattggacgatcccaaaattagaattgttaggaattgagattggatcaaatctgg
cttcttccatcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTCAAGCCCAGACGCAGATAC 220 533 20 Antisense
ATACTTACACCATCAAAATCGCCGA 694 21 41 Antisense
AAATCGCCGATGTCCAAACCATTAT 308 119 56 Antisense
AACCATTATGCATCCCACCAAAAGA 692 143 72 Antisense
GCTGAAACCTTTGACCCATTGGGAC 80 253 115 Antisense
AAAGCACGAATTACTGATCTTCTCG 44 125 180 Antisense
TCGGACGCTTCTCAAGACATCTATG 143 607 202 Antisense
AAGACATCTATGCAGCAGCCGCTTA 659 143 215 Antisense
TTACGCCTACTTCTCATATGGTGAC 231 683 237 Antisense
TGACGATAGACCTCCAGTGATCTCC 618 569 258 Antisense
TCAAATCTGGCTTCTTCCATCGTGA 444 629 370 Antisense
Sequence Source Affymetrix Proprietary Database