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[172051_x_at]

Description Y73B3A.N /REP_DB=WormBase Gene ID /WP=CE26582 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 47      4grp_high_8_8 > 11      6grp_total > 37      4grp_total > 21      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 202.1
(1.7)
P 		117.1
(-3)
P 		150.3
(-1.2)
P 		224.9
(3)
P 		108
B 199.5
(3)
P 		163.5
(1)
P 		92.9
(-3)
M 		185.4
(2.2)
P 		107
C 223
(0)
P 		199.4
(-0.5)
P 		80.4
(-3)
P 		365
(3)
P 		285
avr 208.2
(1) 		160
(-0.9) 		107.9
(-3) 		258.4
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 322.1
(3)
P 		190.2
(-1.8)
P 		191.4
(-1.7)
P 		155.9
(-3)
P 		161.3
(-2.8)
P 		165.7
(-2.6)
P 		166
B 207
(-0.3)
P 		184
(-1.4)
P 		149.6
(-3)
P 		204.2
(-0.5)
P 		170.5
(-2)
P 		278.7
(3)
P 		129
C 174
(-0.1)
P 		227
(3)
P 		166.9
(-0.6)
A 		196.1
(1.2)
P 		125.5
(-3)
P 		222.3
(2.7)
P 		102
avr 234.4
(3) 		200.4
(0.5) 		169.3
(-1.8) 		185.4
(-0.6) 		152.4
(-3) 		222.2
(2.1) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 73.6
(3)
P 		25.4
(-3)
P 		39.3
(-1.3)
P 		32.9
(-2.1)
P 		48
B 63.6
(3)
P 		40.4
(-0.3)
P 		21.5
(-3)
M 		39.5
(-0.4)
P 		42
C 73.8
(3)
P 		57.3
(0.8)
P 		28
(-3)
P 		61.5
(1.4)
P 		46
avr 70.3
(3) 		41
(-1.3) 		29.6
(-3) 		44.6
(-0.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 59.4
(1.2)
P 		67.6
(3)
P 		41.7
(-2.5)
P 		39.5
(-3)
P 		48.7
(-1)
P 		40.3
(-2.8)
P 		28
B 72
(0.2)
P 		61.2
(-0.8)
P 		36.3
(-3)
P 		54.1
(-1.4)
P 		69.3
(-0.1)
P 		103.9
(3)
P 		68
C 64.5
(1.3)
P 		69.3
(2.1)
P 		42.5
(-2.5)
A 		39.4
(-3)
P 		40.6
(-2.8)
P 		74.4
(3)
P 		35
avr 65.3
(1.6) 		66
(1.7) 		40.2
(-3) 		44.3
(-2.2) 		52.9
(-0.7) 		72.9
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172051_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19585
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.N NCBI
Target Description Y73B3A.N /REP_DB=WormBase Gene ID /WP=CE26582 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075663 NCBI Caenorhabditis elegans Y73B3A.11 (Y73B3A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000022352 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:141327:149051:1 10/11 None
Y73B3A.11 ENSEMBL cdna:known chromosome:CEL140:X:146463:148812:1 gene:Y73B3A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072838 1/11 Cross Hyb Matching Probes A 
NM_067869 2/11 Cross Hyb Matching Probes A 
NM_058300 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000014677 5/11 Cross Hyb Matching Probes None
SNAP00000014669 2/11 Cross Hyb Matching Probes None
SNAP00000036504 2/11 Cross Hyb Matching Probes None
GENEFINDER00000036596 4/11 Cross Hyb Matching Probes None
SNAP00000031765 4/11 Cross Hyb Matching Probes None
GENEFINDER00000031782 7/11 Cross Hyb Matching Probes None
SNAP00000022320 5/11 Cross Hyb Matching Probes None
Y48G1BM.5 5/11 Cross Hyb Matching Probes A 
Y54G2A.21 2/11 Cross Hyb Matching Probes A 
ZC190.8 1/11 Cross Hyb Matching Probes A 
Y116F11B.10b 7/11 Cross Hyb Matching Probes A 
Y116F11B.10a 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:146462-148812(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.11
Entrez Gene 190629 Entrez gene
SwissProt Q95XF8 EMBL-EBI
WormBase CE26582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39354 Hypothetical protein Y73B3A.11 [Caenorhabditis elegans] ref|NP_508064.1| Y73B3A.11 [Caenorhabditis elegans] 1.0E-71
blast AAK39354 Hypothetical protein Y73B3A.11 [Caenorhabditis elegans] ref|NP_508064.1| Y73B3A.11 [Caenorhabditis elegans] 7.0E-55
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 2.0E-44
blast NP_505144 W02D7.6 [Caenorhabditis elegans] gb|AAB63936.2| Hypothetical protein W02D7.6 [Caenorhabditis elegans] 4.0E-37
blast AAK68497 Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans] ref|NP_490701.1| Y48G1BM.5 [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:172051_X_AT
agtgcaagttgatatccagccgattggactaattcaaaaaaacacgtccattcccggtct
ttccatcgtaccaaaatatgcaacagttctgccaatttcttcgcaaaatgatcttcggga
cccaaaagcagttatacgggacgtcacggctgcccaaaaaagaaaaaatttagcgaaaaa
aaaaaatcaattttcgctccaagaaaaggcttccacaatcgacaaaatctcgaaatgctg
tgcccgacttctcacaaaacgtacaaacttctatttcatttggaggcaattcgacgaaaa
ttggattccgtggtctaccgagcaatgctctttctcgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCAAGTTGATATCCAGCCGATT 159 61 18 Antisense
GGTCTTTCCATCGTACCAAAATATG 379 501 73 Antisense
GCAACAGTTCTGCCAATTTCTTCGC 563 319 97 Antisense
TTCGCAAAATGATCTTCGGGACCCA 340 691 117 Antisense
GCAGTTATACGGGACGTCACGGCTG 70 311 145 Antisense
GGACGTCACGGCTGCCCAAAAAAGA 538 515 156 Antisense
TTCGCTCCAAGAAAAGGCTTCCACA 597 695 210 Antisense
AGGCTTCCACAATCGACAAAATCTC 620 51 224 Antisense
AATCTCGAAATGCTGTGCCCGACTT 71 167 243 Antisense
GATTCCGTGGTCTACCGAGCAATGC 630 431 321 Antisense
TACCGAGCAATGCTCTTTCTCGTCC 695 649 333 Antisense
Sequence Source Affymetrix Proprietary Database