[Home] | [Total List]

[172050_x_at]

Description Y73B3A.Q /REP_DB=WormBase Gene ID /WP=CE26585 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 25      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 163.6
(3)
A 		121.5
(-0.2)
A 		85.3
(-3)
A 		150.1
(2)
A 		78
B 163.9
(3)
A 		73.7
(-3)
A 		85.5
(-2.2)
A 		148.5
(2)
A 		90
C 125.6
(-0.7)
A 		118.8
(-1.7)
A 		110.6
(-3)
A 		149.9
(3)
A 		39
avr 151
(3) 		104.7
(-1.9) 		93.8
(-3) 		149.5
(2.8) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 144
(2.5)
A 		149.1
(3)
A 		96.8
(-2.4)
A 		91.1
(-3)
A 		108.2
(-1.2)
A 		96.9
(-2.4)
A 		58
B 146
(3)
P 		134.4
(2.2)
P 		123.9
(1.5)
A 		83.8
(-1.2)
A 		57.9
(-3)
A 		126.2
(1.7)
A 		88
C 173.9
(3)
A 		160.3
(2.1)
P 		111.4
(-1.1)
A 		136.9
(0.5)
P 		83.5
(-3)
A 		98.8
(-2)
A 		90
avr 154.6
(3) 		147.9
(2.4) 		110.7
(-0.7) 		103.9
(-1.3) 		83.2
(-3) 		107.3
(-1) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 59.6
(3)
A 		26.4
(-2.3)
A 		22.3
(-3)
A 		22
(-3)
A 		38
B 52.3
(3)
A 		18.2
(-3)
A 		19.8
(-2.7)
A 		31.7
(-0.6)
A 		34
C 41.6
(3)
A 		34.2
(0.3)
A 		38.5
(1.9)
A 		25.3
(-3)
A 		16
avr 51.2
(3) 		26.3
(-3) 		26.9
(-2.9) 		26.3
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 26.5
(-2)
A 		53
(3)
A 		21.1
(-3)
A 		23.1
(-2.6)
A 		32.6
(-0.8)
A 		23.6
(-2.5)
A 		32
B 50.8
(3)
P 		44.7
(1.7)
P 		30.1
(-1.3)
A 		22.2
(-3)
A 		23.5
(-2.7)
A 		47
(2.2)
A 		29
C 64.5
(3)
A 		48.9
(0.5)
P 		28.4
(-2.8)
A 		27.5
(-2.9)
P 		27
(-3)
A 		33.1
(-2)
A 		38
avr 47.3
(2.6) 		48.9
(3) 		26.5
(-2.5) 		24.3
(-3) 		27.7
(-2.2) 		34.6
(-0.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172050_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19580
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.Q NCBI
Target Description Y73B3A.Q /REP_DB=WormBase Gene ID /WP=CE26585 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075662(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075662 NCBI Caenorhabditis elegans Y73B3A.9 (Y73B3A.9) mRNA, complete cds. 9/11 A 
SNAP00000022321 ENSEMBL cdna:SNAP chromosome:CEL140:X:150365:150728:-1 11/11 None
GENEFINDER00000022345 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:150365:152567:-1 9/11 None
Y73B3A.9 ENSEMBL cdna:known chromosome:CEL140:X:150365:154445:-1 gene:Y73B3A.9 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069607 5/11 Cross Hyb Matching Probes A B 
SNAP00000000762 4/11 Cross Hyb Matching Probes None
GENEFINDER00000000775 4/11 Cross Hyb Matching Probes None
T11G6.5 5/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10836154-10836507(-) 97.99 97.99
chrX:150364-150713(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.9
Entrez Gene 190627 Entrez gene
SwissProt Q95XF9 EMBL-EBI
WormBase CE27335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 1.0E-161
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 1.0E-90
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 2.0E-42
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 9.0E-41
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 1.0E-30
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 3.0E-30
Sequence
Target Sequence 
>C. ELEGANS:172050_X_AT
agaacacgatcatgcacaagtacttcaaaacttttaatgattttatcagatgtcatccac
cattggtcgaggtactaccacttcatttttgtgacagaggcgccacaggctcgggactgg
cgaattgcattgcaggagtcaagcatgttggcgcaatacacgctattttcttgacccaaa
atcacaaaccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACACGATCATGCACAAGTACTT 512 73 26 Antisense
ATCAGATGTCATCCACCATTGGTCG 608 27 70 Antisense
ATCCACCATTGGTCGAGGTACTACC 122 37 80 Antisense
CGAGGTACTACCACTTCATTTTTGT 477 247 93 Antisense
TTTTGTGACAGAGGCGCCACAGGCT 160 677 112 Antisense
CACAGGCTCGGGACTGGCGAATTGC 14 195 129 Antisense
GGGACTGGCGAATTGCATTGCAGGA 297 495 138 Antisense
GCAGGAGTCAAGCATGTTGGCGCAA 299 311 157 Antisense
TGTTGGCGCAATACACGCTATTTTC 5 563 171 Antisense
TACACGCTATTTTCTTGACCCAAAA 502 643 182 Antisense
TCTTGACCCAAAATCACAAACCAGA 451 615 194 Antisense
Sequence Source Affymetrix Proprietary Database