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[172049_x_at]

Description Y73B3A.O /REP_DB=WormBase Gene ID /WP=CE26583 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 56      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 25.8
(-0.6)
A 		60.9
(3)
A 		37.6
(0.6)
A 		2.9
(-3)
A 		58
B 34.3
(3)
A 		4.6
(-3)
A 		17.4
(-0.4)
A 		24.1
(0.9)
A 		30
C 12.9
(-3)
A 		40.8
(2.5)
A 		43.5
(3)
A 		27.9
(-0.1)
A 		31
avr 24.3
(-0.9) 		35.4
(3) 		32.8
(2.1) 		18.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.3
(-3)
A 		2.4
(-3)
A 		12.9
(0.5)
A 		20.5
(3)
A 		9.1
(-0.8)
A 		4
(-2.4)
A 		18
B 4.1
(-1.9)
A 		13.9
(3)
A 		9.9
(1)
A 		2.3
(-2.8)
A 		1.9
(-3)
A 		11
(1.6)
A 		12
C 15.5
(0.4)
A 		22.2
(2.4)
A 		4
(-3)
A 		5.9
(-2.4)
A 		13.5
(-0.2)
A 		24.4
(3)
A 		20
avr 7.3
(-3) 		12.8
(2.7) 		8.9
(-1.3) 		9.6
(-0.6) 		8.2
(-2.1) 		13.1
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.4
(1.2)
A 		13.2
(3)
A 		9.8
(1.4)
A 		0.4
(-3)
A 		13
B 10.9
(3)
A 		1.1
(-3)
A 		4
(-1.2)
A 		5.1
(-0.6)
A 		10
C 4.3
(-3)
A 		11.7
(1.1)
A 		15.2
(3)
A 		4.7
(-2.8)
A 		11
avr 8.2
(1.6) 		8.7
(2) 		9.7
(3) 		3.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.9
(-2.4)
A 		2.8
(0)
A 		5.2
(3)
A 		2.7
(-0.1)
A 		1
(-2.3)
A 		5
B 1.4
(-1.8)
A 		4.6
(3)
A 		2.4
(-0.3)
A 		0.6
(-3)
A 		0.8
(-2.7)
A 		4.1
(2.3)
A 		4
C 5.8
(1)
A 		6.8
(1.8)
A 		1
(-3)
A 		1.2
(-2.8)
A 		4.4
(-0.2)
A 		8.2
(3)
A 		7
avr 2.5
(-2) 		4.1
(2.2) 		2.1
(-3) 		2.3
(-2.5) 		2.6
(-1.7) 		4.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172049_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19573
Sequence Type Exemplar sequence
Representative Public ID Y73B3A.O NCBI
Target Description Y73B3A.O /REP_DB=WormBase Gene ID /WP=CE26583 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075661(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075661 NCBI Caenorhabditis elegans Y73B3A.10 (Y73B3A.10) mRNA, complete cds. 10/11 None
GENEFINDER00000022350 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:152690:157389:-1 10/11 None
Y73B3A.10 ENSEMBL cdna:known chromosome:CEL140:X:154783:157360:-1 gene:Y73B3A.10 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069607 1/11 Cross Hyb Matching Probes A B 
NM_061817 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000020158 1/11 Cross Hyb Matching Probes None
SNAP00000000762 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000775 1/11 Cross Hyb Matching Probes None
SNAP00000022325 6/11 Cross Hyb Matching Probes None
F54A3.3 1/11 Cross Hyb Matching Probes A 
T11G6.5 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:154997-157344(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73B3A.10
Entrez Gene 190628 Entrez gene
SwissProt Q95XG0 EMBL-EBI
WormBase CE37297 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 9.0E-47
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 5.0E-45
blast AAF35963 Hypothetical protein F54A3.3 [Caenorhabditis elegans] ref|NP_494218.2| F54A3.3 [Caenorhabditis elegans] 5.0E-39
blast AAK39355 Hypothetical protein Y73B3A.10 [Caenorhabditis elegans] ref|NP_508062.2| Y73B3A.10 [Caenorhabditis elegans] 6.0E-37
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 7.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 7.4E-18
Sequence
Target Sequence 
>C. ELEGANS:172049_X_AT
aatccgaagattgtaccaggtggcggagctcttgaaatggctctgagccgtgaaattgag
cagcaagaagccaaaatggacggagtcaagaaatggccgtacaaggcgattggattggct
ctcgaagttgacatgaacaaactcgaaatctgggatccgcttgccgtccgcattcaagtt
ctcaagacagccatcgaaacattggtaaaattgaaattgttgaagctacgacggagcaga
gaaatgagcttgctgaaagtgcgaagaaatcgatggacaagaacatcggaagaaggatgg
aagcataaggtggcttcaaatgtaaagatgattgaaaatcacaggctaaggcacaatttt
caaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGAAGATTGTACCAGGTGGCG 204 165 19 Antisense
GTACCAGGTGGCGGAGCTCTTGAAA 8 459 31 Antisense
GAGCTCTTGAAATGGCTCTGAGCCG 13 389 44 Antisense
CTCTGAGCCGTGAAATTGAGCAGCA 35 227 59 Antisense
GGAGTCAAGAAATGGCCGTACAAGG 301 515 100 Antisense
GTACAAGGCGATTGGATTGGCTCTC 520 461 117 Antisense
GGATTGGCTCTCGAAGTTGACATGA 661 507 130 Antisense
AACTCGAAATCTGGGATCCGCTTGC 375 141 158 Antisense
CCGTCCGCATTCAAGTTCTCAAGAC 474 265 182 Antisense
GTTCTCAAGACAGCCATCGAAACAT 420 443 196 Antisense
ACAGGCTAAGGCACAATTTTCAAAC 630 107 359 Antisense
Sequence Source Affymetrix Proprietary Database