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[172047_x_at]

Description g6681681 /REP_DB=GenBank Identifier /GB=AB017107.1 /PROTEIN_GB=BAA88838.1 /CHR=3 /FEA=Mapped Transcript /DEF=Kinesin associated protein kap-1
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 41      4grp_high_8_8 > 28      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 28      6grp_highest_sub > 03      6grp_cgc > 72      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 277.8
(-0)
P 		224.4
(-1.9)
A 		192
(-3)
M 		366.2
(3)
P 		174
B 335.7
(2.7)
P 		345.2
(3)
P 		164.6
(-3)
P 		311
(1.9)
P 		181
C 251.9
(-1.1)
P 		246
(-1.3)
A 		212.6
(-3)
P 		333.6
(3)
P 		121
avr 288.5
(1) 		271.9
(0.4) 		189.7
(-3) 		336.9
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 375
(1.4)
P 		347.6
(0.2)
P 		412
(3)
P 		324
(-0.8)
P 		348.5
(0.3)
P 		272
(-3)
P 		140
B 370
(0.2)
P 		364.9
(0.1)
P 		473.5
(3)
P 		408.5
(1.3)
P 		248.4
(-3)
P 		272.2
(-2.4)
P 		225
C 228.6
(-2.3)
P 		449.9
(3)
P 		318.7
(-0.2)
P 		374.7
(1.2)
P 		201.5
(-3)
P 		326.2
(0)
P 		248
avr 324.5
(-0.4) 		387.5
(2.4) 		401.4
(3) 		369.1
(1.6) 		266.1
(-3) 		290.1
(-1.9) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 101.2
(3)
P 		48.7
(-3)
A 		50.2
(-2.8)
M 		53.6
(-2.4)
P 		53
B 107.1
(3)
P 		85.3
(1.1)
P 		38.1
(-3)
P 		66.3
(-0.5)
P 		69
C 83.4
(3)
P 		70.7
(0.2)
A 		74.1
(0.9)
P 		56.2
(-3)
P 		27
avr 97.2
(3) 		68.2
(-1) 		54.1
(-3) 		58.7
(-2.4) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 69.1
(-2.7)
P 		123.6
(3)
P 		89.7
(-0.5)
P 		82.2
(-1.3)
P 		105.2
(1.1)
P 		66.2
(-3)
P 		57
B 128.7
(3)
P 		121.5
(1.4)
P 		115
(0)
P 		108.2
(-1.4)
P 		100.9
(-3)
P 		101.5
(-2.9)
P 		28
C 84.7
(-1.4)
P 		137.3
(3)
P 		81.1
(-1.7)
P 		75.3
(-2.2)
P 		65.2
(-3)
P 		109.2
(0.7)
P 		72
avr 94.2
(-2.1) 		127.5
(3) 		95.3
(-2) 		88.6
(-3) 		90.4
(-2.7) 		92.3
(-2.4) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172047_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19802
Sequence Type Exemplar sequence
Representative Public ID 6681681 NCBI
Target Description g6681681 /REP_DB=GenBank Identifier /GB=AB017107.1 /PROTEIN_GB=BAA88838.1 /CHR=3 /FEA=Mapped Transcript /DEF=Kinesin associated protein kap-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027445(11), NM_001026076(11), NM_001026075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027445 NCBI Caenorhabditis elegans yeast Glc Seven-like Phosphatases family member (gsp-2) (gsp-2) mRNA, complete cds. 11/11 None
NM_001026076 NCBI Caenorhabditis elegans Kinesin-Associated Protein family member (kap-1) (kap-1) mRNA, complete cds. 11/11 None
NM_001026075 NCBI Caenorhabditis elegans Kinesin-Associated Protein family member (kap-1) (kap-1) mRNA, complete cds. 11/11 None
GENEFINDER00000010823 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7338923:7343495:1 10/11 None
SNAP00000010808 ENSEMBL cdna:SNAP chromosome:CEL140:III:7339592:7343495:1 10/11 None
F56C9.1.1 ENSEMBL cdna:known chromosome:CEL140:III:7336508:7343568:1 gene:F56C9.1 11/11 None
F08F8.3a ENSEMBL cdna:known chromosome:CEL140:III:7338923:7343548:1 gene:F08F8.3 11/11 None
F08F8.3b ENSEMBL cdna:known chromosome:CEL140:III:7338923:7343495:1 gene:F08F8.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7338920-7343566(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gsp-2
Ensembl F56C9.1
F08F8.3
Entrez Gene 3564807 Entrez gene
SwissProt P48727 EMBL-EBI
WormBase CE01319 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20314_S_AT serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) at
ATH1-121501:254923_AT serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) at
CANINE:1582493_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
CANINE_2:CFAAFFX.18039.1.S1_S_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
CANINE_2:CFA.3471.1.S1_AT protein phosphatase 1, catalytic subunit, alpha isoform cfa
DROSOPHILA_2:1625806_AT Protein phosphatase 1 at 96A dm
DROSGENOME1:143310_AT Protein phosphatase 1 at 96A dm
HG-U133_PLUS_2:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U133A:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-FOCUS:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U133A_2:200846_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
U133_X3P:G4506002_3P_A_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U95AV2:32157_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
HG-U95D:74577_S_AT protein phosphatase 1, catalytic subunit, alpha isoform hs
MOUSE430_2:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MOE430A:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MOUSE430A_2:1460165_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBA:AA218341_S_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.3454.0_F_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.10308.0_F_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MG-U74CV2:134841_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MG-U74BV2:165128_R_AT protein phosphatase 1, catalytic subunit, alpha isoform mm
MU11KSUBB:MSA.29209.0_S_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBB:TC31824_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBC:TC36035_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
MU19KSUBC:TC39781_AT Protein phosphatase 1, catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:25955 IMAGE:4239005) mm
RG-U34A:S78215_S_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RG-U34C:RC_AA817897_S_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RAE230A:1386863_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
RAT230_2:1386863_AT protein phosphatase 1, catalytic subunit, alpha isoform rn
YEAST_2:1777225_AT Catalytic subunit of type 1 serine/threonine protein phosphatase, involved in many processes including glycogen metabolism, sporulation, and mitosis; interacts with multiple regulatory subunits; predominantly isolated with Sds22p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18957 Yeast glc seven-like phosphatases protein 2 [Caenorhabditis elegans] ref|NP_001022616.1| yeast Glc Seven-like Phosphatases family member (gsp-2) [Caenorhabditis elegans] sp|P48727|YMEX_CAEEL Putative serine/threonine protein phosphatase F56C9.1 in chromosome III 0.0
blast CAE57617 Hypothetical protein CBG00598 [Caenorhabditis briggsae] 0.0
blast AAK68307 Kinesin-associated protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021247.1| Kinesin-Associated Protein family member (kap-1) [Caenorhabditis elegans] dbj|BAA88838.1| Kinesin associated protein kap-1 [Caenorhabditis elegans] 0.0
blast AAM22059 Kinesin-associated protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021246.1| Kinesin-Associated Protein family member (kap-1) [Caenorhabditis elegans] 0.0
blast AAF99086 KAP [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR008658 EMBL-EBI Kinesin-associated 2.1E-122
Pfam IPR008658 EMBL-EBI Kinesin-associated 1.0E-126
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.7E-44
Sequence
Target Sequence 
>C. ELEGANS:172047_X_AT
acataaaacctctccaactacaaattgtaattgcttgtggaacaatggctaggcaattgg
atgcagctaggttattggctcctttgattgatacatttgtgcagttattacaatcatgcc
aaattgatgatgagtttgttgtgcaacttctctacgttttcttgcaatttttaaagcaca
aggaactatctgctcgcctgatgactcaagattcagctctcggagcccatatgatcgatt
tgatgcacgatgcaaacgcagtggttcgagaagtttgcgataatgcccttttgataatgg
gtgaacattcaaaagaatgggcaaaacggatagctggagagagattcaaatggcacaatg
cacaatggttggagatggttgagcgagacgacagcgaattcgtagattacgatgatgaag
attttggagctgatctcaaatttgatcactatgatgatggatttgatatgaatgagcccc
ttttttaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATAAAACCTCTCCAACTACAAAT 564 69 1565 Antisense
GCAGCTAGGTTATTGGCTCCTTTGA 306 313 1627 Antisense
GAGTTTGTTGTGCAACTTCTCTACG 251 399 1696 Antisense
CTTCTCTACGTTTTCTTGCAATTTT 391 221 1711 Antisense
GCACAAGGAACTATCTGCTCGCCTG 601 317 1740 Antisense
ATCTGCTCGCCTGATGACTCAAGAT 369 33 1752 Antisense
GACTCAAGATTCAGCTCTCGGAGCC 522 373 1767 Antisense
AGCTCTCGGAGCCCATATGATCGAT 89 81 1779 Antisense
GTTTGCGATAATGCCCTTTTGATAA 177 451 1837 Antisense
GGTTGAGCGAGACGACAGCGAATTC 380 507 1941 Antisense
TATGAATGAGCCCCTTTTTTAACTT 695 653 2031 Antisense
Sequence Source GenBank