[Home] | [Total List]

[172045_x_at]

Description g6671362 /REP_DB=GenBank Identifier /GB=AF216291.1 /PROTEIN_GB=AAF23175.1 /CHR=4 /FEA=Mapped Transcript /DEF=histone H1.Q
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_high_8_8 > 36      6grp_highest_nonorm > 03      6grp_total > 27      4grp_total > 44      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2590
1 2 3 4 range
A 1963.5
(-0.6)
P 		3191.6
(3)
P 		1315.4
(-2.5)
M 		1158.9
(-3)
P 		2033
B 1935.8
(0.6)
P 		2457.3
(3)
P 		1127.6
(-3)
P 		1372
(-1.9)
P 		1330
C 2014.4
(1.9)
P 		2315.4
(3)
P 		1170.3
(-1)
P 		601.4
(-3)
P 		1714
avr 1971.2
(0.5) 		2654.8
(3) 		1204.4
(-2.4) 		1044.1
(-3) 		1611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5583
1 2 3 4 5 6 range
A 6564.2
(3)
P 		3528.6
(-0.4)
P 		1441.9
(-2.7)
P 		1155.6
(-3)
P 		1137.5
(-3)
P 		3406.9
(-0.5)
P 		5427
B 4980.9
(3)
P 		3227.5
(0.4)
P 		1494.6
(-2.2)
P 		1265.4
(-2.6)
P 		981.6
(-3)
P 		2415
(-0.8)
P 		3999
C 5697.1
(3)
P 		3371.6
(-0.1)
P 		1633.8
(-2.4)
P 		1141.3
(-3)
P 		1268.3
(-2.8)
P 		2736.4
(-0.9)
P 		4556
avr 5747.4
(3) 		3375.9
(-0.1) 		1523.4
(-2.5) 		1187.4
(-2.9) 		1129.1
(-3) 		2852.8
(-0.8) 		4618
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 714.9
(3)
P 		692.8
(2.8)
P 		343.9
(-1.1)
M 		169.6
(-3)
P 		545
B 617.3
(3)
P 		606.9
(2.8)
P 		261.3
(-3)
P 		292.4
(-2.5)
P 		356
C 666.8
(3)
P 		665.7
(3)
P 		407.9
(0.3)
P 		101.4
(-3)
P 		565
avr 666.3
(3) 		655.1
(2.9) 		337.7
(-1.1) 		187.8
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1882
1 2 3 4 5 6 range
A 1210.1
(2.7)
P 		1255
(3)
P 		314
(-2.9)
P 		293.1
(-3)
P 		343.3
(-2.7)
P 		829.5
(0.3)
P 		962
B 1733.1
(3)
P 		1074.3
(0.2)
P 		362.9
(-2.9)
P 		335.1
(-3)
P 		398.8
(-2.7)
P 		900.5
(-0.6)
P 		1398
C 2111.7
(3)
P 		1028.8
(-0.5)
P 		415.8
(-2.4)
P 		229.5
(-3)
P 		410.4
(-2.4)
P 		916
(-0.8)
P 		1882
avr 1685
(3) 		1119.4
(0.6) 		364.2
(-2.7) 		285.9
(-3) 		384.2
(-2.6) 		882
(-0.4) 		1399
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172045_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19886
Sequence Type Exemplar sequence
Representative Public ID 6671362 NCBI
Target Description g6671362 /REP_DB=GenBank Identifier /GB=AF216291.1 /PROTEIN_GB=AAF23175.1 /CHR=4 /FEA=Mapped Transcript /DEF=histone H1.Q
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026111(11), NM_001026112(11), NM_068626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026111 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 None
NM_001026112 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 None
NM_068626 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 A 
C01B10.5b.2 ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646875:1 gene:C01B10.5 11/11 A 
C01B10.5b.1 ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646920:1 gene:C01B10.5 11/11 A 
C01B10.5c ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646917:1 gene:C01B10.5 11/11 A 
C01B10.5a ENSEMBL cdna:known chromosome:CEL140:IV:6646331:6646923:1 gene:C01B10.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026113 1/11 Cross Hyb Matching Probes None
SNAP00000026863 5/11 Cross Hyb Matching Probes None
GENEFINDER00000026870 7/11 Cross Hyb Matching Probes None
C01B10.5e 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177433 4 3 NM_001026111 171921_x_at (11), 172045_x_at (11), 172675_x_at (10)
NM_001026112 171921_x_at (11), 172045_x_at (11), 172675_x_at (9)
NM_068626 171921_x_at (11), 172045_x_at (11), 172675_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6646371-6646903(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01B10.5
Sequence
Target Sequence 
>C. ELEGANS:172045_X_AT
ctactctcagccactaattctaaaaatggccgccgtccaaaaagccaagaaagtcgctaa
gaccaagaaggttgctgccaagccaaaggctccaaaggtcaagaaggcctcaccaaagaa
ggctgctgctccaaaggccaagaagccagtgaagaaggccgccgccaagaaatctccagc
caagaaggccgcaccaaagaagaagtaaacaattcaaatcttcaaatcaaatctctgaaa
ctccagaatctcaatcttctatcaaccaccaaaatgccttcatctacattcatttaatga
ttctaaactacctcatctttctcacttttcagtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTCTCAGCCACTAATTCTAAAA 173 227 20 Antisense
TAATTCTAAAAATGGCCGCCGTCCA 626 629 34 Antisense
AGGTTGCTGCCAAGCCAAAGGCTCC 500 57 88 Antisense
CTCACCAAAGAAGGCTGCTGCTCCA 5 229 128 Antisense
GCTGCTGCTCCAAAGGCCAAGAAGC 299 297 141 Antisense
AAGAAGGCCGCCGCCAAGAAATCTC 580 151 171 Antisense
AAATCTCCAGCCAAGAAGGCCGCAC 522 115 189 Antisense
GAATCTCAATCTTCTATCAACCACC 217 329 265 Antisense
ATCAACCACCAAAATGCCTTCATCT 409 27 280 Antisense
TGATTCTAAACTACCTCATCTTTCT 61 563 317 Antisense
CTCATCTTTCTCACTTTTCAGTAAA 333 229 331 Antisense
Sequence Source GenBank