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[172044_x_at]

Description g6690645 /REP_DB=GenBank Identifier /GB=AF192400.1 /PROTEIN_GB=AAF24233.1 /CHR=3 /FEA=Mapped Transcript /DEF=emb-30 protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 612.9
(3)
P 		191
(-3)
P 		264.8
(-2)
P 		338.2
(-0.9)
P 		422
B 640.3
(3)
P 		298.3
(-3)
P 		388.6
(-1.4)
P 		348.9
(-2.1)
P 		342
C 574.1
(3)
P 		304.3
(-3)
P 		404.5
(-0.8)
P 		396.1
(-1)
P 		270
avr 609.1
(3) 		264.5
(-3) 		352.6
(-1.5) 		361.1
(-1.3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 485.8
(-1.3)
P 		413.1
(-2.5)
P 		437.7
(-2.1)
P 		380.8
(-3)
P 		446.2
(-1.9)
P 		748.4
(3)
P 		368
B 463
(-0.8)
P 		467.1
(-0.8)
P 		216.2
(-3)
P 		515.6
(-0.3)
P 		426.9
(-1.1)
P 		886.7
(3)
P 		671
C 412
(-0.7)
P 		576.4
(1.5)
P 		410.6
(-0.7)
P 		232.2
(-3)
P 		384.7
(-1)
P 		694.6
(3)
P 		462
avr 453.6
(-1.6) 		485.5
(-1.1) 		354.8
(-3) 		376.2
(-2.7) 		419.3
(-2.1) 		776.6
(3) 		422
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 223.2
(3)
P 		41.5
(-3)
P 		69.2
(-2.1)
P 		49.5
(-2.7)
P 		182
B 204.2
(3)
P 		73.7
(-3)
P 		90
(-2.3)
P 		74.4
(-3)
P 		131
C 190
(3)
P 		87.5
(-2)
P 		141
(0.6)
P 		66.8
(-3)
P 		123
avr 205.8
(3) 		67.6
(-2.8) 		100.1
(-1.5) 		63.6
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 89.6
(-3)
P 		146.9
(0.7)
P 		95.3
(-2.6)
P 		96.6
(-2.5)
P 		134.6
(-0.1)
P 		182.2
(3)
P 		93
B 161.1
(-0.7)
P 		155.5
(-0.8)
P 		52.5
(-3)
P 		136.6
(-1.2)
P 		173.5
(-0.4)
P 		330.6
(3)
P 		278
C 152.7
(0.4)
P 		175.9
(1.2)
P 		104.5
(-1.1)
P 		46.7
(-3)
P 		124.5
(-0.5)
P 		232.5
(3)
P 		186
avr 134.5
(-1.2) 		159.4
(-0.3) 		84.1
(-3) 		93.3
(-2.7) 		144.2
(-0.8) 		248.4
(3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172044_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19814
Sequence Type Exemplar sequence
Representative Public ID 6690645 NCBI
Target Description g6690645 /REP_DB=GenBank Identifier /GB=AF192400.1 /PROTEIN_GB=AAF24233.1 /CHR=3 /FEA=Mapped Transcript /DEF=emb-30 protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066673 NCBI Caenorhabditis elegans abnormal EMBroygenesis family member (emb-30) (emb-30) mRNA, complete cds. 11/11 A 
F54C8.3 ENSEMBL cdna:known chromosome:CEL140:III:9434979:9441356:-1 gene:F54C8.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014860 3/11 Cross Hyb Matching Probes None
GENEFINDER00000014870 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9435149-9441350(-) 99.31 100.0
Public Domain and Genome References
Gene Title
Gene Symbol emb-30
Ensembl F54C8.3
Entrez Gene 176322 Entrez gene
SwissProt P34441 EMBL-EBI
WormBase CE32676 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80159 Hypothetical protein F54C8.3 [Caenorhabditis elegans] ref|NP_499074.2| abnormal EMBroygenesis family member (emb-30) [Caenorhabditis elegans] gb|AAF24233.1| emb-30 protein [Caenorhabditis elegans] sp|P34441|EMB30_CAEEL Abnormal embryogenesis protein 0.0
blast G88554 protein F54C8.3 [imported] - Caenorhabditis elegans 0.0
blast CAE65218 Hypothetical protein CBG10093 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172044_X_AT
tgaaaccagaggttccaccgatcgctgactatgaggagaagactgttcgaaaaactttcc
gcgactatcagagacgtcgagaacgatatcgggaagatatgggagtaatgaacatgaatg
atgttcagtatgatgttcttgttcaagaagctatggatagtggacgtgacttgacggata
atggagaatcagatgaggatgaagaagatgatgacatttagtttccaatcgatggataaa
ttattgcatttctatgtttatatttcgtattactttgaaattatttctcctttccaatct
attgcatttcttttcttggctttccctcttacaatctcattttgctttttgcgggcacct
ataaacgtgtttttagtcaaaactcgtttcttctagttttagtttgatgcaaatgtaagg
cttgagtttcaaagttttcaagttttcaataattcatctttattttttataatcaggaag
ctgatatcttacgagggcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACCAGAGGTTCCACCGATCGC 363 573 2875 Antisense
CCACCGATCGCTGACTATGAGGAGA 176 275 2889 Antisense
AAAACTTTCCGCGACTATCAGAGAC 39 131 2925 Antisense
GATGACATTTAGTTTCCAATCGATG 65 413 3084 Antisense
ATTTCTCCTTTCCAATCTATTGCAT 212 17 3157 Antisense
TATTGCATTTCTTTTCTTGGCTTTC 399 665 3174 Antisense
TTTCCCTCTTACAATCTCATTTTGC 177 671 3195 Antisense
TCATTTTGCTTTTTGCGGGCACCTA 280 615 3211 Antisense
TGCGGGCACCTATAAACGTGTTTTT 654 573 3224 Antisense
TAGTCAAAACTCGTTTCTTCTAGTT 81 655 3248 Antisense
GAAGCTGATATCTTACGAGGGCGTA 270 343 3351 Antisense
Sequence Source GenBank