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[172043_x_at]

Description g9857642 /REP_DB=GenBank Identifier /GB=AB038503.1 /PROTEIN_GB=BAB11968.1 /CHR=2 /FEA=Mapped Transcript /DEF=galectin LEC-2
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 06      6grp_total > 27      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6080
1 2 3 4 range
A 9816.5
(-2.1)
P 		9227.3
(-3)
P 		10120.5
(-1.7)
P 		13214.9
(3)
P 		3988
B 10214.5
(-2.4)
P 		9726.5
(-3)
P 		9966.5
(-2.7)
P 		14860.2
(3)
P 		5134
C 9591.6
(-1.9)
P 		9766.3
(-1.6)
P 		8780.1
(-3)
P 		13026.3
(3)
P 		4246
avr 9874.2
(-2.6) 		9573.4
(-3) 		9622.4
(-2.9) 		13700.5
(3) 		4127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6168
1 2 3 4 5 6 range
A 12325.6
(3)
P 		10543.4
(0.8)
P 		8696.2
(-1.5)
P 		7524.7
(-3)
P 		8695.7
(-1.5)
P 		10159
(0.3)
P 		4801
B 10071.9
(2.4)
P 		10334.7
(3)
P 		8852.9
(-0.5)
P 		7812.6
(-3)
P 		8175
(-2.1)
P 		9314.5
(0.6)
P 		2522
C 9972.6
(2.7)
P 		9389.1
(1.9)
P 		10142.1
(3)
P 		6157.9
(-3)
P 		9011.1
(1.3)
P 		9509.8
(2)
P 		3984
avr 10790
(3) 		10089.1
(1.8) 		9230.4
(0.4) 		7165.1
(-3) 		8627.3
(-0.6) 		9661.1
(1.1) 		3625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1640
1 2 3 4 range
A 3574.2
(3)
P 		2003
(-2.7)
P 		2645.7
(-0.4)
P 		1934.4
(-3)
P 		1640
B 3257.3
(3)
P 		2402.2
(-2.4)
P 		2309.5
(-3)
P 		3166.7
(2.4)
P 		948
C 3175.1
(3)
P 		2807.9
(0.7)
P 		3060.1
(2.3)
P 		2196.4
(-3)
P 		979
avr 3335.5
(3) 		2404.4
(-3) 		2671.8
(-1.3) 		2432.5
(-2.8) 		931

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2511
1 2 3 4 5 6 range
A 2272.1
(-1.8)
P 		3749.8
(3)
P 		1893.8
(-3)
P 		1908.4
(-3)
P 		2624
(-0.6)
P 		2473.4
(-1.1)
P 		1856
B 3504.5
(3)
P 		3440
(2.7)
P 		2149.7
(-2.7)
P 		2069.3
(-3)
P 		3321.4
(2.2)
P 		3473.3
(2.9)
P 		1435
C 3696.4
(3)
P 		2864.9
(1)
P 		2581.3
(0.3)
P 		1238.4
(-3)
P 		2915.9
(1.1)
P 		3183.5
(1.7)
P 		2458
avr 3157.7
(2.3) 		3351.6
(3) 		2208.3
(-1.3) 		1738.7
(-3) 		2953.8
(1.5) 		3043.4
(1.9) 		1613
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172043_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19722
Sequence Type Exemplar sequence
Representative Public ID 9857642 NCBI
Target Description g9857642 /REP_DB=GenBank Identifier /GB=AB038503.1 /PROTEIN_GB=BAB11968.1 /CHR=2 /FEA=Mapped Transcript /DEF=galectin LEC-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027018(11), NM_063764(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027018 NCBI Caenorhabditis elegans gaLECtin family member (lec-2) (lec-2) mRNA, complete cds. 11/11 None
NM_063764 NCBI Caenorhabditis elegans gaLECtin family member (lec-2) (lec-2) mRNA, complete cds. 10/11 A 
SNAP00000021621 ENSEMBL cdna:SNAP chromosome:CEL140:II:10009804:10011196:-1 10/11 None
GENEFINDER00000021633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10009804:10016159:-1 10/11 None
F52H3.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:10009517:10014650:-1 gene:F52H3.7 11/11 A 
F52H3.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:10009517:10011244:-1 gene:F52H3.7 11/11 A 
F52H3.7b.3 ENSEMBL cdna:known chromosome:CEL140:II:10009520:10011246:-1 gene:F52H3.7 11/11 A 
F52H3.7a ENSEMBL cdna:known chromosome:CEL140:II:10009804:10015971:-1 gene:F52H3.7 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10009676-10011243(-) 99.02 99.02
Public Domain and Genome References
Ensembl F52H3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91327 Hypothetical protein F52H3.7a [Caenorhabditis elegans] ref|NP_496165.3| gaLECtin family member (lec-2) [Caenorhabditis elegans] 0.0
blast CAA91327 Hypothetical protein F52H3.7a [Caenorhabditis elegans] ref|NP_496165.3| gaLECtin family member (lec-2) [Caenorhabditis elegans] 1.0E-162
blast CAC70097 Hypothetical protein F52H3.7b [Caenorhabditis elegans] ref|NP_001022189.1| gaLECtin family member (lec-2) [Caenorhabditis elegans] dbj|BAB11968.1| galectin LEC-2 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 4.3E-27
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 6.6E-55
Sequence
Target Sequence 
>C. ELEGANS:172043_X_AT
ggagtacgagcatcgtgtgccactctcctccatcacacacttcactatcgacggagatgt
tcttgtcaactacattcactggggaggaaagtactatccagttccatatgagagtgggct
cgccggagagggacttgccccaggcaagactcttactgtctttggaattccagagaagaa
ggccaagagattccacatcaatcttctcaagaagaacggagatattgctcttcatcttaa
cgctcgtttcgatgagaagcacgtcgttcgcaactcgttgatcaactccgcttggggaaa
tgaggagcgtgaaggaaaaatgccatttgagaaggctgttggatttgatttggagatcca
taacgagccatacgcattcgctgtcaccgtgaacggagaacgtttcgcatcgtatgctca
ccgtctcagtcctgatgaggtcaatggactccaaatcggaggagacgttgagatcaccgg
aatccaactcgcctaaatgttgcccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTACGAGCATCGTGTGCCACTC 48 515 404 Antisense
TCACACACTTCACTATCGACGGAGA 89 627 436 Antisense
GCCCCAGGCAAGACTCTTACTGTCT 602 285 540 Antisense
GATATTGCTCTTCATCTTAACGCTC 401 427 624 Antisense
ATGAGAAGCACGTCGTTCGCAACTC 667 43 655 Antisense
CAACTCGTTGATCAACTCCGCTTGG 239 189 674 Antisense
ATAACGAGCCATACGCATTCGCTGT 95 25 763 Antisense
GGAGAACGTTTCGCATCGTATGCTC 346 519 798 Antisense
CTCACCGTCTCAGTCCTGATGAGGT 44 229 820 Antisense
TTGAGATCACCGGAATCCAACTCGC 280 701 871 Antisense
CCAACTCGCCTAAATGTTGCCCATT 486 275 887 Antisense
Sequence Source GenBank