[Home] | [Total List]

[172042_x_at]

Description g3769343 /REP_DB=GenBank Identifier /GB=AB018598.1 /PROTEIN_GB=BAA33886.1 /CHR=5 /FEA=Mapped Transcript /DEF=ATM-like protein
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 45      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 76      6grp_total > 40      4grp_total > 39      6grp_cgc > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1046
1 2 3 4 range
A 1447.7
(3)
P 		546.7
(-3)
P 		561.8
(-2.9)
P 		796.7
(-1.3)
P 		901
B 1570.1
(3)
P 		659.2
(-2.3)
P 		536.3
(-3)
P 		888
(-1)
P 		1034
C 1582.1
(3)
P 		609.6
(-3)
P 		607
(-3)
P 		804.9
(-1.8)
P 		975
avr 1533.3
(3) 		605.2
(-2.8) 		568.4
(-3) 		829.9
(-1.4) 		965

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 1169.5
(2.2)
P 		1223
(3)
P 		1112.7
(1.4)
P 		1068.6
(0.7)
P 		820.7
(-3)
P 		996.2
(-0.4)
P 		402
B 1333.6
(3)
P 		1127
(1.1)
P 		853.9
(-1.5)
P 		1273.2
(2.4)
P 		690
(-3)
P 		999
(-0.1)
P 		644
C 892.3
(-0.2)
P 		1168.1
(3)
P 		1082.7
(2)
P 		1116.7
(2.4)
P 		651.3
(-3)
P 		898.1
(-0.1)
P 		517
avr 1131.8
(2.5) 		1172.7
(3) 		1016.4
(0.9) 		1152.8
(2.7) 		720.7
(-3) 		964.4
(0.2) 		452
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 527.1
(3)
P 		118.7
(-3)
P 		146.9
(-2.6)
P 		116.6
(-3)
P 		411
B 500.7
(3)
P 		162.8
(-2.4)
P 		124.3
(-3)
P 		189.2
(-2)
P 		376
C 523.7
(3)
P 		175.3
(-2.4)
P 		211.6
(-1.8)
P 		135.7
(-3)
P 		388
avr 517.2
(3) 		152.3
(-2.9) 		160.9
(-2.8) 		147.2
(-3) 		370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 215.6
(-3)
P 		435
(3)
P 		242.3
(-2.3)
P 		271
(-1.5)
P 		247.7
(-2.1)
P 		242.5
(-2.3)
P 		219
B 464
(3)
P 		375.1
(0.9)
P 		207.4
(-3)
P 		337.2
(0)
P 		280.4
(-1.3)
P 		372.5
(0.9)
P 		257
C 330.7
(1.9)
P 		356.4
(3)
P 		275.6
(-0.3)
P 		224.6
(-2.4)
P 		210.8
(-3)
P 		300.7
(0.7)
P 		146
avr 336.8
(0.9) 		388.8
(3) 		241.8
(-3) 		277.6
(-1.5) 		246.3
(-2.8) 		305.2
(-0.4) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172042_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19912
Sequence Type Exemplar sequence
Representative Public ID 3769343 NCBI
Target Description g3769343 /REP_DB=GenBank Identifier /GB=AB018598.1 /PROTEIN_GB=BAA33886.1 /CHR=5 /FEA=Mapped Transcript /DEF=ATM-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028939(11), NM_073086(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028939 NCBI Caenorhabditis elegans ATM(ataxia telangectasia mutated)-Like family member (atl-1) (atl-1) mRNA, complete cds. 11/11 None
NM_073086 NCBI Caenorhabditis elegans ATM(ataxia telangectasia mutated)-Like family member (atl-1) (atl-1) mRNA, complete cds. 9/11 A 
GENEFINDER00000007462 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9637564:9648038:-1 9/11 None
T06E4.3b ENSEMBL cdna:known chromosome:CEL140:V:9637445:9648086:-1 gene:T06E4.3 11/11 None
T06E4.3a ENSEMBL cdna:known chromosome:CEL140:V:9637564:9648038:-1 gene:T06E4.3 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007443 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9637444-9648086(-) 100.0 100.0
Public Domain and Genome References
Ensembl T06E4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42337 Hypothetical protein T06E4.3b [Caenorhabditis elegans] ref|NP_001024110.1| ATM(ataxia telangectasia mutated)-Like family member (atl-1) [Caenorhabditis elegans] dbj|BAA33886.1| ATM-like protein [Caenorhabditis elegans] 0.0
blast CAA94790 Hypothetical protein T06E4.3a [Caenorhabditis elegans] ref|NP_505487.3| ATM(ataxia telangectasia mutated)-Like family member (atl-1) [Caenorhabditis elegans] 0.0
blast CAE72216 Hypothetical protein CBG19327 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 1.1E-86
Pfam IPR003152 EMBL-EBI PIK-related kinase, FATC 7.3E-17
Pfam IPR003151 EMBL-EBI PIK-related kinase, FAT 5.7E-33
Pfam IPR003151 EMBL-EBI PIK-related kinase, FAT 1.0E-126
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 1.1E-86
Pfam IPR003152 EMBL-EBI PIK-related kinase, FATC 7.3E-17
Pfam IPR003151 EMBL-EBI PIK-related kinase, FAT 1.0E-126
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 1.1E-86
Pfam IPR003152 EMBL-EBI PIK-related kinase, FATC 7.3E-17
Pfam IPR003151 EMBL-EBI PIK-related kinase, FAT 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172042_X_AT
gaactcctgaattggtaccattccgtcttacacaaaatatgatcaacggaatgggcgaag
tggcacttgatggagaattcaggacagtatgtgaacaagcacttcgagttttccgagaaa
actcatacgaaattgagaaatatattgctgatctgccaaatcttgttgcagattttccaa
gtaacaaaagagctccgaaagatttcgatatgtcagaagcaaagcgactagtatcaggac
gtcttcgcggtcaaatcatgacggcaaagctctatcgaagtaatccaatctctcatccaa
tgcaagtatcacaactcgcatcatcactcattgaacttgcgaccagtgaggagaaactca
gtgagatgtatctcggttggatggcgaccctctaagatctcttttttacgtgtaacatga
attatctcggtctcatttgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCCTGAATTGGTACCATTCCG 221 349 7211 Antisense
GTACCATTCCGTCTTACACAAAATA 10 457 7225 Antisense
GTGAACAAGCACTTCGAGTTTTCCG 82 483 7301 Antisense
TTGCTGATCTGCCAAATCTTGTTGC 681 701 7355 Antisense
TAGTATCAGGACGTCTTCGCGGTCA 284 651 7439 Antisense
TAATCCAATCTCTCATCCAATGCAA 580 635 7491 Antisense
AAGTATCACAACTCGCATCATCACT 399 157 7514 Antisense
ATCACTCATTGAACTTGCGACCAGT 170 29 7533 Antisense
TGTATCTCGGTTGGATGGCGACCCT 82 559 7577 Antisense
GACCCTCTAAGATCTCTTTTTTACG 552 381 7596 Antisense
GAATTATCTCGGTCTCATTTGAAAA 100 325 7629 Antisense
Sequence Source GenBank