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[172041_x_at]

Description g3114214 /REP_DB=GenBank Identifier /GB=AF031414.1 /PROTEIN_GB=AAC15827.1 /CHR=X /FEA=Mapped Transcript /DEF=serotonin receptor
Cluster 6grp_total > 43      4grp_total > 35      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 74.7
(-0.2)
A 		32.3
(-2)
A 		9.3
(-3)
A 		147.1
(3)
A 		138
B 4.6
(-3)
A 		76.8
(3)
A 		44.2
(0.3)
A 		5.4
(-2.9)
A 		72
C 8.5
(-3)
A 		152.3
(3)
A 		26.5
(-2.2)
A 		67.7
(-0.5)
A 		144
avr 29.3
(-2.7) 		87.1
(3) 		26.7
(-3) 		73.4
(1.6) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 64.7
(3)
A 		22.2
(-1.6)
A 		48.1
(1.2)
A 		9.6
(-2.9)
A 		9.1
(-3)
A 		49.1
(1.3)
A 		56
B 26.1
(1.4)
A 		34.8
(3)
A 		33.9
(2.8)
A 		3
(-3)
A 		8
(-2.1)
A 		11.8
(-1.3)
A 		32
C 9.7
(-2.5)
A 		9.2
(-2.6)
A 		48
(2.4)
A 		33.3
(0.5)
A 		52.5
(3)
A 		5.7
(-3)
A 		47
avr 33.5
(0.9) 		22.1
(-1.5) 		43.3
(3) 		15.3
(-3) 		23.2
(-1.3) 		22.2
(-1.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 27.2
(3)
A 		7
(-1.9)
A 		2.4
(-3)
A 		21.5
(1.6)
A 		25
B 1.5
(-2.9)
A 		19
(3)
A 		10.2
(0)
A 		1.2
(-3)
A 		18
C 2.8
(-3)
A 		43.8
(3)
A 		9.2
(-2.1)
A 		11.4
(-1.7)
A 		41
avr 10.5
(-1.8) 		23.3
(3) 		7.3
(-3) 		11.4
(-1.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.9
(2.9)
A 		7.9
(0.4)
A 		10.5
(2.1)
A 		2.4
(-3)
A 		2.8
(-2.8)
A 		12
(3)
A 		10
B 9.1
(1.6)
A 		11.6
(3)
A 		8.2
(1.1)
A 		0.8
(-3)
A 		3.2
(-1.7)
A 		4.4
(-1)
A 		11
C 3.6
(-2.3)
A 		2.8
(-2.6)
A 		12.2
(1.1)
A 		6.7
(-1.1)
A 		17
(3)
A 		1.9
(-3)
A 		15
avr 8.2
(1.2) 		7.4
(0.5) 		10.3
(3) 		3.3
(-3) 		7.7
(0.8) 		6.1
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172041_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20028
Sequence Type Exemplar sequence
Representative Public ID 3114214 NCBI
Target Description g3114214 /REP_DB=GenBank Identifier /GB=AF031414.1 /PROTEIN_GB=AAC15827.1 /CHR=X /FEA=Mapped Transcript /DEF=serotonin receptor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029557(11), NM_001029558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029557 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-1) (ser-1) mRNA, complete cds. 11/11 None
NM_001029558 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-1) (ser-1) mRNA, complete cds. 11/11 None
SNAP00000016441 ENSEMBL cdna:SNAP chromosome:CEL140:X:16581919:16587375:1 10/11 None
GENEFINDER00000016446 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16581919:16587375:1 10/11 None
F59C12.2 ENSEMBL cdna:known chromosome:CEL140:X:16579636:16587614:1 gene:F59C12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16579628-16587614(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59C12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29709 Serotonin/octopamine receptor family protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024728.1| SERotonin/octopamine receptor family member (ser-1) [Caenorhabditis elegans] gb|AAC15827.1| serotonin receptor [Caenorhabditis elegans] 0.0
blast AAX88827 Serotonin/octopamine receptor family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024729.1| SERotonin/octopamine receptor family member (ser-1) [Caenorhabditis elegans] gb|AAC15778.1| serotonin receptor [Caenorhabditis elegans] 0.0
blast T29877 hypothetical protein F59C12.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.3E-83
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.3E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024728.1 7 58-80,93-115,130-152,171-193,213-235,373-395,408-430
NP_001024729.1 7 10-32,45-67,82-104,123-145,165-187,325-347,360-382
F59C12.2 7 58-80,93-115,130-152,171-193,213-235,373-395,408-430
SNAP00000016441 7 10-32,45-67,82-104,123-145,165-187,325-347,360-382
GENEFINDER00000016446 7 10-32,45-67,82-104,123-145,165-187,325-347,360-382
Sequence
Target Sequence 
>C. ELEGANS:172041_X_AT
ttatcccaaaatcaacagttccggcaacagtgatcaacatccccgaacaactgatcaacc
caatcaaaaagtcactgaccacaataatcaacatgccactgctggatgagacaattcccg
agaaagctcaagtccaccataaaagccagacgcttctcacctcatcaacactaaatttcg
caactttttcaacgtgcccacagcagccgacaagatcctactcttgcgtggactgcaaaa
aagccgagaaaatgttgtcttcggatgttagtgacatgatgaccacttccacggcgagca
ctgcgtcgacagtcaacggagctccacggaaacatctaactctattcaatcactttgata
gtgccatcaaggaaacattcttgtaaattcaaaagccatgtggctcttcatatcgtttcc
ttcttttatctccttgccaaatcattccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCCCAAAATCAACAGTTCCGGC 607 667 1708 Antisense
TCCGGCAACAGTGATCAACATCCCC 528 593 1727 Antisense
CAACATCCCCGAACAACTGATCAAC 293 189 1742 Antisense
ATAAAAGCCAGACGCTTCTCACCTC 427 25 1846 Antisense
TTCTCACCTCATCAACACTAAATTT 696 689 1861 Antisense
TTCGCAACTTTTTCAACGTGCCCAC 418 697 1884 Antisense
GCCGACAAGATCCTACTCTTGCGTG 235 285 1913 Antisense
AGTGACATGATGACCACTTCCACGG 313 59 1977 Antisense
TGCGTCGACAGTCAACGGAGCTCCA 431 583 2009 Antisense
AGCTCCACGGAAACATCTAACTCTA 305 81 2027 Antisense
TTATCTCCTTGCCAAATCATTCCAT 553 679 2133 Antisense
Sequence Source GenBank