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[172035_x_at]

Description g10198019 /REP_DB=GenBank Identifier /GB=AF273796.1 /PROTEIN_GB=AAG15144.1 /CHR=5 /FEA=Mapped Transcript /DEF=nuclear receptor NHR-50
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 16      4grp_highest_8_8 > 51      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 331.7
(3)
P 		150.7
(-3)
P 		166.3
(-2.5)
P 		171.7
(-2.3)
P 		181
B 377
(3)
P 		178.6
(-1.7)
P 		123
(-3)
P 		146.3
(-2.4)
P 		254
C 307.1
(3)
P 		127.7
(-2.2)
P 		99.3
(-3)
P 		181.7
(-0.6)
P 		208
avr 338.6
(3) 		152.3
(-2.3) 		129.5
(-3) 		166.6
(-1.9) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 384.6
(3)
P 		302.9
(1.2)
P 		161.6
(-1.9)
P 		184.9
(-1.4)
P 		110.7
(-3)
P 		141.6
(-2.3)
P 		274
B 300.5
(3)
P 		194.9
(-0.5)
P 		118
(-3)
P 		162.1
(-1.6)
P 		139.9
(-2.3)
P 		130.5
(-2.6)
P 		183
C 305.6
(3)
P 		213.6
(0)
P 		181.3
(-1)
P 		120
(-3)
P 		124.6
(-2.9)
P 		162.6
(-1.6)
P 		186
avr 330.2
(3) 		237.1
(0.3) 		153.6
(-2.2) 		155.7
(-2.1) 		125.1
(-3) 		144.9
(-2.4) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 120.8
(3)
P 		32.7
(-2.5)
P 		43.5
(-1.8)
P 		25.1
(-3)
P 		96
B 120.2
(3)
P 		44.1
(-2)
P 		28.5
(-3)
P 		31.2
(-2.8)
P 		92
C 101.6
(3)
P 		36.7
(-2.5)
P 		34.6
(-2.7)
P 		30.6
(-3)
P 		71
avr 114.2
(3) 		37.8
(-2.4) 		35.5
(-2.5) 		29
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 70.9
(0)
P 		107.7
(3)
P 		35.2
(-2.9)
P 		46.9
(-1.9)
P 		33.4
(-3)
P 		34.5
(-2.9)
P 		74
B 104.6
(3)
P 		64.9
(-0.1)
P 		28.7
(-3)
P 		42.9
(-1.9)
P 		56.8
(-0.8)
P 		48.6
(-1.4)
P 		76
C 113.3
(3)
P 		65.2
(-0.2)
P 		46.1
(-1.5)
P 		24.1
(-3)
P 		40.3
(-1.9)
P 		54.4
(-1)
P 		89
avr 96.3
(3) 		79.3
(1.3) 		36.7
(-3) 		38
(-2.9) 		43.5
(-2.3) 		45.8
(-2.1) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172035_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19923
Sequence Type Exemplar sequence
Representative Public ID 10198019 NCBI
Target Description g10198019 /REP_DB=GenBank Identifier /GB=AF273796.1 /PROTEIN_GB=AAG15144.1 /CHR=5 /FEA=Mapped Transcript /DEF=nuclear receptor NHR-50
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074614(11), NM_001026206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074614 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-50) (nhr-50) mRNA, complete cds. 11/11 A 
NM_001026206 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-50) (nhr-50) mRNA, complete cds. 11/11 None
SNAP00000040511 ENSEMBL cdna:SNAP chromosome:CEL140:V:16000415:16001440:-1 11/11 None
GENEFINDER00000040521 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16000415:16002206:-1 11/11 None
C06C6.5a ENSEMBL cdna:known chromosome:CEL140:V:16000353:16002206:-1 gene:C06C6.5 11/11 A 
C06C6.5b ENSEMBL cdna:known chromosome:CEL140:V:16000355:16002742:-1 gene:C06C6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16000356-16002742(-) 99.77 99.77
Public Domain and Genome References
Ensembl C06C6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07555 Hypothetical protein C06C6.5a [Caenorhabditis elegans] ref|NP_507015.3| Nuclear Hormone Receptor family member (nhr-50) [Caenorhabditis elegans] 0.0
blast CAB07555 Hypothetical protein C06C6.5a [Caenorhabditis elegans] ref|NP_507015.3| Nuclear Hormone Receptor family member (nhr-50) [Caenorhabditis elegans] 1.0E-129
blast CAB07558 Hypothetical protein C06C6.4 [Caenorhabditis elegans] ref|NP_741645.3| Nuclear Hormone Receptor family member (nhr-63) [Caenorhabditis elegans] 2.0E-93
blast AAG15164 nuclear receptor NHR-63 [Caenorhabditis elegans] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0062
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.9E-8
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0062
Sequence
Target Sequence 
>C. ELEGANS:172035_X_AT
gaagctcttctccgaaactttcttccgaagtggtcagttttaacagcggctattgatatg
gaagttaaagtgcaaagatactcaaaagtcaacaatactgaagagtttaaaagaatgatt
gtagatttctttacatattcaatgccagagaagttcaaaatgccaccggaagatatattg
aaagtgttcggacccatgatagtgtactacgtaacaaaaattattcttccaattcatgaa
aaaggcttggaccagccggaatttatggcgttggcgctgattattttgttcgatggagcc
tactccaacatctccgtggagtgctccgaaatgtgccgaacaattcgcaacctgatattt
cgagagctcaaaaattatcaaaccgacaagaactttgatgaaattcagtttgccgatact
gtcgacaccttgaatattgtggaaaaaggagagaagaagttctatgaagagcttttgata
tgtgatatgcacaatgtgcacttacacgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCTTCTCCGAAACTTTCTTC 109 343 1139 Antisense
AGTGGTCAGTTTTAACAGCGGCTAT 499 59 1167 Antisense
GTTCGGACCCATGATAGTGTACTAC 137 441 1324 Antisense
GGACCAGCCGGAATTTATGGCGTTG 636 521 1387 Antisense
GGCGTTGGCGCTGATTATTTTGTTC 481 541 1405 Antisense
TATTTTGTTCGATGGAGCCTACTCC 317 663 1420 Antisense
CCAACATCTCCGTGGAGTGCTCCGA 58 277 1443 Antisense
GAGTGCTCCGAAATGTGCCGAACAA 249 401 1457 Antisense
GAACAATTCGCAACCTGATATTTCG 348 353 1476 Antisense
TTGCCGATACTGTCGACACCTTGAA 408 701 1548 Antisense
TGCACAATGTGCACTTACACGAGGA 586 577 1626 Antisense
Sequence Source GenBank