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[172031_x_at]

Description g1289521 /REP_DB=GenBank Identifier /GB=U53931.1 /PROTEIN_GB=AAA98566.1 /CHR=2 /FEA=Mapped Transcript /DEF=elav-type ribonucleoprotein
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 77      6grp_total > 38      4grp_total > 36      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 582
1 2 3 4 range
A 1480.7
(0.4)
P 		1722.9
(3)
P 		1167
(-3)
P 		1225.1
(-2.4)
P 		556
B 1516.6
(-3)
P 		1748.7
(3)
P 		1569.7
(-1.6)
P 		1749
(3)
P 		232
C 1606.9
(0.4)
P 		1443.3
(-3)
P 		1464.3
(-2.6)
P 		1729
(3)
P 		286
avr 1534.7
(0.4) 		1638.3
(3) 		1400.3
(-3) 		1567.7
(1.2) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 1772.9
(3)
P 		1396.8
(-1)
P 		1362
(-1.4)
P 		1214.6
(-3)
P 		1440.3
(-0.6)
P 		1363.9
(-1.4)
P 		558
B 1541.4
(1.9)
P 		1292.9
(-3)
P 		1290.6
(-3)
P 		1600.8
(3)
P 		1329.5
(-2.2)
P 		1428.6
(-0.3)
P 		310
C 1445.7
(0.7)
P 		1273.7
(-2.9)
P 		1267.3
(-3)
P 		1398.2
(-0.3)
P 		1376
(-0.8)
P 		1560.1
(3)
P 		293
avr 1586.7
(3) 		1321.1
(-2.7) 		1306.6
(-3) 		1404.5
(-0.9) 		1381.9
(-1.4) 		1450.9
(0.1) 		280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 539.1
(3)
P 		374
(0.2)
P 		305.1
(-0.9)
P 		179.3
(-3)
P 		360
B 483.6
(3)
P 		431.9
(0.4)
P 		363.7
(-3)
P 		372.7
(-2.5)
P 		120
C 531.9
(3)
P 		415
(0.1)
P 		510.4
(2.5)
P 		291.5
(-3)
P 		240
avr 518.2
(3) 		407
(0.2) 		393.1
(-0.2) 		281.2
(-3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 326.8
(-2.1)
P 		496.8
(3)
P 		296.6
(-3)
P 		308
(-2.7)
P 		434.6
(1.1)
P 		332.1
(-1.9)
P 		200
B 536.3
(2.9)
P 		430.3
(0.1)
P 		313.4
(-3)
P 		424
(-0.1)
P 		540.2
(3)
P 		532.7
(2.8)
P 		227
C 535.9
(3)
P 		388.7
(-0.5)
P 		322.5
(-2)
P 		281.2
(-3)
P 		445.2
(0.9)
P 		522.3
(2.7)
P 		255
avr 466.3
(2.7) 		438.6
(1.7) 		310.8
(-3) 		337.7
(-2) 		473.3
(3) 		462.4
(2.6) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172031_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19745
Sequence Type Exemplar sequence
Representative Public ID 1289521 NCBI
Target Description g1289521 /REP_DB=GenBank Identifier /GB=U53931.1 /PROTEIN_GB=AAA98566.1 /CHR=2 /FEA=Mapped Transcript /DEF=elav-type ribonucleoprotein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061272(11), NM_001027124(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061272 NCBI Caenorhabditis elegans ELAV-Type RNA binding protein family member (etr-1) (etr-1) mRNA, complete cds. 11/11 A 
NM_001027124 NCBI Caenorhabditis elegans ELAV-Type RNA binding protein family member (etr-1) (etr-1) mRNA, complete cds. 10/11 None
SNAP00000043213 ENSEMBL cdna:SNAP chromosome:CEL140:II:163142:169679:1 10/11 None
GENEFINDER00000043224 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:162992:169679:1 9/11 None
T01D1.2a.4 ENSEMBL cdna:known chromosome:CEL140:II:162374:170628:1 gene:T01D1.2 11/11 None
T01D1.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:163084:170628:1 gene:T01D1.2 11/11 A 
T01D1.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:163086:170628:1 gene:T01D1.2 11/11 A 
T01D1.2a.3 ENSEMBL cdna:known chromosome:CEL140:II:163086:170152:1 gene:T01D1.2 10/11 A 
T01D1.2a.5 ENSEMBL cdna:known chromosome:CEL140:II:163086:170606:1 gene:T01D1.2 11/11 None
T01D1.2b ENSEMBL cdna:known chromosome:CEL140:II:164641:169679:1 gene:T01D1.2 10/11 A 
T01D1.2c ENSEMBL cdna:known chromosome:CEL140:II:168532:170119:1 gene:T01D1.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027125 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173401 3 2 NM_001027124 172031_x_at (10), 192227_s_at (11)
NM_061272 172031_x_at (11), 192227_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:163086-170628(+) 95.74 100.0
Public Domain and Genome References
Ensembl T01D1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37881 Elav-type rna binding protein family protein 1, isoform a [Caenorhabditis elegans] ref|NP_493673.1| ELAV-Type RNA binding protein family member (etr-1) [Caenorhabditis elegans] gb|AAA98566.1| elav-type ribonucleoprotein [Caenorhabditis elegans] 0.0
blast CAE62798 Hypothetical protein CBG06972 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-16
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.9E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.0E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.2E-8
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.0E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 6.7E-8
Sequence
Target Sequence 
>C. ELEGANS:172031_X_AT
ggatcatttccaggctatgcagcaatatgcactccttgcaaatcttcaagcaaccggcgg
cgttggcgtgcaggccacaacctcagcagctcaaatggttggaaacggtgacgtaaaggg
tccagacggtgcgaatctcttcatatatcacttaccacaagattttggagacagtgactt
gataaatacgtttgcgccgtttggtggaatactgtcggcgaaggttttcatcgataaagt
cacgaatttgtcgaaatgctttggtttcgtctcgtatgagaacgctcagtcagctacaaa
cgcaatttctgcaatgaacggcttccaaattggttcgaaacgactgaaagtacagttgaa
agtggatcgtggaaatccttacaatcgataaaagtatcattttttggattgaaatccaga
gaaaaaagaaaaaaagcaatctactaaacaaatcgaaacgggattttcttgcctttcctc
tgaagtattgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCATTTCCAGGCTATGCAGCAA 582 511 1432 Antisense
TATGCAGCAATATGCACTCCTTGCA 575 655 1447 Antisense
TGCAAATCTTCAAGCAACCGGCGGC 421 575 1468 Antisense
CCACAACCTCAGCAGCTCAAATGGT 480 275 1506 Antisense
TCCAGACGGTGCGAATCTCTTCATA 670 589 1552 Antisense
ATCTCTTCATATATCACTTACCACA 248 33 1566 Antisense
TGCGCCGTTTGGTGGAATACTGTCG 652 583 1624 Antisense
AATGCTTTGGTTTCGTCTCGTATGA 379 165 1686 Antisense
GAACGCTCAGTCAGCTACAAACGCA 416 347 1711 Antisense
ATTTCTGCAATGAACGGCTTCCAAA 291 17 1736 Antisense
TTGCCTTTCCTCTGAAGTATTGCCA 437 699 1900 Antisense
Sequence Source GenBank