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[172030_x_at] ICE-like protease (caspase) p10 domain.

Description g4063377 /REP_DB=GenBank Identifier /GB=AF088290.1 /PROTEIN_GB=AAC98297.1 /CHR=1 /FEA=Mapped Transcript /DEF=caspase-related protein 3
Cluster 6grp_total > 69      4grp_total > 12      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 112.8
(-2.3)
A 		81.6
(-3)
A 		88.7
(-2.8)
A 		342
(3)
P 		260
B 136.6
(-0.8)
P 		119.6
(-1.4)
A 		76.5
(-3)
A 		242.7
(3)
P 		166
C 129.6
(-0.9)
M 		78.2
(-2.4)
A 		54.8
(-3)
A 		271
(3)
P 		216
avr 126.3
(-1.5) 		93.1
(-2.4) 		73.3
(-3) 		285.2
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 111.5
(1.5)
A 		51.7
(-3)
A 		111.9
(1.6)
P 		81.8
(-0.7)
A 		126.1
(2.6)
P 		131
(3)
P 		79
B 119.4
(3)
P 		82.2
(-3)
A 		82.9
(-2.9)
P 		93.6
(-1.2)
P 		108.9
(1.3)
P 		108.2
(1.2)
P 		37
C 84.2
(-1.4)
A 		97.7
(0.3)
A 		77.5
(-2.3)
P 		72.1
(-3)
A 		80.1
(-2)
M 		118.8
(3)
P 		47
avr 105
(1) 		77.2
(-3) 		90.8
(-1.1) 		82.5
(-2.2) 		105
(1) 		119.3
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 41.1
(1.3)
A 		17.7
(-3)
A 		23.2
(-2)
A 		50.1
(3)
P 		32
B 43.6
(1.6)
P 		29.6
(-0.9)
A 		17.7
(-3)
A 		51.7
(3)
P 		34
C 42.9
(2.4)
M 		22.5
(-2.2)
A 		19.1
(-3)
A 		45.7
(3)
P 		27
avr 42.5
(1.6) 		23.3
(-2.3) 		20
(-3) 		49.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 20.5
(-2.4)
A 		18.4
(-3)
A 		24.4
(-1.2)
P 		20.8
(-2.3)
A 		38.1
(3)
P 		31.9
(1.1)
P 		20
B 41.6
(2.3)
P 		27.4
(-1.2)
A 		20.1
(-3)
P 		24.8
(-1.8)
P 		44.3
(3)
P 		40.4
(2)
P 		24
C 31.2
(1)
A 		29.8
(0.6)
A 		19.7
(-1.8)
P 		14.5
(-3)
A 		25.9
(-0.3)
M 		39.8
(3)
P 		25
avr 31.1
(0.8) 		25.2
(-1.2) 		21.4
(-2.5) 		20
(-3) 		36.1
(2.6) 		37.4
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172030_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19695
Sequence Type Exemplar sequence
Representative Public ID 4063377 NCBI
Target Description g4063377 /REP_DB=GenBank Identifier /GB=AF088290.1 /PROTEIN_GB=AAC98297.1 /CHR=1 /FEA=Mapped Transcript /DEF=caspase-related protein 3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060610 NCBI Caenorhabditis elegans CaSPase family member (csp-3) (csp-3) mRNA, complete cds. 11/11 None
Y47H9C.6 ENSEMBL cdna:known chromosome:CEL140:I:11896625:11897462:-1 gene:Y47H9C.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028404 4/11 Cross Hyb Matching Probes None
GENEFINDER00000036901 5/11 Cross Hyb Matching Probes None
SNAP00000036885 4/11 Cross Hyb Matching Probes None
SNAP00000032031 1/11 Cross Hyb Matching Probes None
GENEFINDER00000032093 1/11 Cross Hyb Matching Probes None
Y73B6BL.7 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6314238-6315711(+) 95.31 95.31
chrI:11896555-11897393(-) 100.0 100.0
Public Domain and Genome References
Gene Title ICE-like protease (caspase) p10 domain.
Gene Symbol csp-3
Ensembl Y47H9C.6
Entrez Gene 173066 Entrez gene
SwissProt Q9XWE0 EMBL-EBI
WormBase CE27635 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
30693 caspase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21735 Hypothetical protein Y47H9C.6 [Caenorhabditis elegans] ref|NP_493011.2| CaSPase family member (csp-3) [Caenorhabditis elegans] gb|AAC98297.1| caspase-related protein 3 [Caenorhabditis elegans] 9.0E-69
blast AAC98296 caspase-related protein 2B [Caenorhabditis elegans] 5.0E-61
blast AAM44398 Caspase protein 2 [Caenorhabditis elegans] ref|NP_001023575.1| CaSPase family member (csp-2) [Caenorhabditis elegans] gb|AAC98295.1| caspase-related protein 2A [Caenorhabditis elegans] 5.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001309 EMBL-EBI Caspase-1, p20 8.4E-26
Sequence
Target Sequence 
>C. ELEGANS:172030_X_AT
ctttttgcaaagagcagtccgctgtgatggattcatcgacaacttttttgatcgtattcc
aaagttcttccagtttatgaaatctaaattcccatcacaccaaacctcgtcgtcgcaagc
ggatttattggtttctttctcaacgtcccctggctttctatcattcaaagatgaaaccaa
agacacatggtatattcaggagctttatcgagtgattattgagaacgcgaaagatactca
tttggcggatcttctgacggagaccaacagacgagtcgtggagaaatatgaggcagataa
agtagtgttcgtgtgtaagcaagcacctgagttctggtcgaggttcacaaaacagctatt
cttcatgtctagaaatgacgtgttttgatgtcaatggcctcggtgatcagtatgctctca
gtacatgtttcaacagttctttcaattgtcacacatttttcccgctgctacgatgaatta
caatacctattcaatttccaatatcggattttctatcaattgtgacgatgtcatgctagc
cttattcatatttaaaatgcccgtttgtcaactcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTTGCAAAGAGCAGTCCGCTGT 423 223 96 Antisense
TGATCGTATTCCAAAGTTCTTCCAG 45 565 144 Antisense
AAACCTCGTCGTCGCAAGCGGATTT 463 123 197 Antisense
TTTGGCGGATCTTCTGACGGAGACC 663 665 336 Antisense
AGCAAGCACCTGAGTTCTGGTCGAG 204 77 413 Antisense
CAATGGCCTCGGTGATCAGTATGCT 422 181 487 Antisense
GTATGCTCTCAGTACATGTTTCAAC 588 455 505 Antisense
TCAATTGTCACACATTTTTCCCGCT 23 635 537 Antisense
TTTTCCCGCTGCTACGATGAATTAC 581 675 552 Antisense
GACGATGTCATGCTAGCCTTATTCA 378 379 619 Antisense
TAAAATGCCCGTTTGTCAACTCTTC 479 639 648 Antisense
Sequence Source GenBank