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[172028_x_at]

Description g5002221 /REP_DB=GenBank Identifier /GB=AF144260.1 /PROTEIN_GB=AAD37368.1 /CHR=1 /FEA=Mapped Transcript /DEF=AP180-like adaptor protein
Cluster 6grp_high1_10_10 > 19      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_total > 24      4grp_total > 38      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 201.2
(0.6)
P 		184.3
(-0.4)
P 		140.9
(-3)
P 		242.7
(3)
P 		102
B 266.8
(3)
P 		124.6
(-3)
P 		185.7
(-0.4)
P 		135.1
(-2.6)
P 		142
C 214.3
(3)
P 		194.1
(1.9)
P 		107
(-3)
P 		170.3
(0.5)
P 		107
avr 227.4
(3) 		167.7
(-1.3) 		144.5
(-3) 		182.7
(-0.2) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 115.4
(1.5)
P 		142.1
(3)
P 		127.1
(2.2)
P 		82.6
(-0.3)
P 		33.6
(-3)
A 		53.8
(-1.9)
P 		109
B 173.5
(3)
P 		121.8
(0.2)
P 		137.1
(1)
P 		98.5
(-1)
P 		61.9
(-3)
M 		104
(-0.7)
P 		112
C 148.6
(0.5)
P 		192.7
(3)
P 		116.8
(-1.2)
P 		85.2
(-3)
P 		168.6
(1.7)
P 		102.9
(-2)
P 		108
avr 145.8
(2.4) 		152.2
(3) 		127
(0.7) 		88.8
(-2.8) 		88
(-2.9) 		86.9
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 73.2
(3)
P 		40
(-2.3)
P 		36.8
(-2.8)
P 		35.5
(-3)
P 		38
B 85.1
(3)
P 		30.8
(-2.8)
P 		43
(-1.5)
P 		28.8
(-3)
P 		56
C 70.9
(3)
P 		55.8
(0.9)
P 		37.3
(-1.8)
P 		28.7
(-3)
P 		42
avr 76.4
(3) 		42.2
(-1.5) 		39
(-1.9) 		31
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 21.3
(-1.3)
P 		50.5
(3)
P 		27.7
(-0.4)
P 		21
(-1.4)
P 		10.1
(-3)
A 		13.1
(-2.6)
P 		40
B 60.4
(3)
P 		40.5
(-0.4)
P 		33.3
(-1.6)
P 		26.1
(-2.8)
P 		25.1
(-3)
M 		38.8
(-0.7)
P 		35
C 55.1
(2.5)
P 		58.8
(3)
P 		29.7
(-1.2)
P 		17.1
(-3)
P 		54.6
(2.4)
P 		34.5
(-0.5)
P 		42
avr 45.6
(2.1) 		49.9
(3) 		30.2
(-1.1) 		21.4
(-3) 		29.9
(-1.2) 		28.8
(-1.4) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172028_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19628
Sequence Type Exemplar sequence
Representative Public ID 5002221 NCBI
Target Description g5002221 /REP_DB=GenBank Identifier /GB=AF144260.1 /PROTEIN_GB=AAD37368.1 /CHR=1 /FEA=Mapped Transcript /DEF=AP180-like adaptor protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058829(10), NM_001025845(11), NM_001025843(10), NM_058827(10), NM_058826(10), NM_058828(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058829 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 10/11 None
NM_001025845 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 11/11 None
NM_001025843 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 10/11 None
NM_058827 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 10/11 None
NM_058826 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 10/11 None
NM_058828 NCBI Caenorhabditis elegans UNCoordinated family member (unc-11) (unc-11) mRNA, complete cds. 10/11 None
SNAP00000040657 ENSEMBL cdna:SNAP chromosome:CEL140:I:3799207:3805706:-1 10/11 None
GENEFINDER00000040668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3799207:3806810:-1 10/11 None
C32E8.10c ENSEMBL cdna:known chromosome:CEL140:I:3798463:3805720:-1 gene:C32E8.10 10/11 A 
C32E8.10f ENSEMBL cdna:known chromosome:CEL140:I:3799126:3805706:-1 gene:C32E8.10 10/11 A 
C32E8.10b ENSEMBL cdna:known chromosome:CEL140:I:3799173:3805706:-1 gene:C32E8.10 10/11 A 
C32E8.10h ENSEMBL cdna:known chromosome:CEL140:I:3799173:3805706:-1 gene:C32E8.10 11/11 A 
C32E8.10d ENSEMBL cdna:known chromosome:CEL140:I:3799207:3805706:-1 gene:C32E8.10 10/11 A 
C32E8.10a ENSEMBL cdna:known chromosome:CEL140:I:3799207:3805706:-1 gene:C32E8.10 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025844 5/11 Cross Hyb Matching Probes None
C32E8.10e 5/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171952 7 6 NM_001025843 172028_x_at (10), 172029_x_at (11), 172150_x_at (10), 172151_x_at (10), 176649_s_at (11)
NM_001025845 172028_x_at (11), 172029_x_at (11), 172150_x_at (10), 172151_x_at (10), 176649_s_at (11)
NM_058826 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176649_s_at (11)
NM_058827 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176648_at (11), 176649_s_at (11)
NM_058828 172028_x_at (10), 172029_x_at (9), 172150_x_at (11), 172151_x_at (9), 176649_s_at (11)
NM_058829 172028_x_at (10), 172029_x_at (11), 172149_x_at (11), 172150_x_at (10), 172151_x_at (10), 172152_x_at (11), 176649_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3799172-3805706(-) 100.0 100.0
Public Domain and Genome References
Ensembl C32E8.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68218 Uncoordinated protein 11, isoform h [Caenorhabditis elegans] ref|NP_001021016.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37366.1| AP180-like adaptor protein [Caenorhabditis elegans] 0.0
blast AAK68213 Uncoordinated protein 11, isoform b [Caenorhabditis elegans] ref|NP_001021014.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37367.1| AP180-like adaptor protein [Caenorhabditis elegans] 0.0
blast AAK68212 Uncoordinated protein 11, isoform a [Caenorhabditis elegans] ref|NP_491227.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] gb|AAD37365.1| AP180-like adaptor protein [Caenorhabditis elegans] sp|Q9XZI6|PICA_CAEEL Phosphatidylinositol-binding clathrin assembly protein unc-11 (AP180-like adaptor protein) (Uncoordinated protein 11) 0.0
blast AAK68214 Uncoordinated protein 11, isoform c [Caenorhabditis elegans] ref|NP_491228.1| UNCoordinated family member (unc-11) [Caenorhabditis elegans] 0.0
blast T25603 hypothetical protein C32E8.10 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 1.1E-44
Sequence
Target Sequence 
>C. ELEGANS:172028_X_AT
ttcgcaaatgatgtcgcttcggctgcacctgctccagctacatcagctgctcagccggat
cttttggatatgttccaatcatcggcagctccagctcctcggtcatcaagctgctccatt
cggatatccaaatgctcatccagatgatcttgctcgaatgactgcacaaatgtcattgaa
tcagcagggttacagagcaccggccggctggaataccacaacttctgccgtctcaaacaa
tccgtttggagcaacgtcggctcctcagccaatgtatacggctccaatgggaatgtatca
acaaccatttggtgctcagccaatgtggaatcctgcgatggcagcatacggtcaacaata
tggatacggacaacctgttccaccacaacagcaacaccaaattcaattggttcatgcagc
gatggctgcaaagaacgctgcacaagctcaacaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCAAATGATGTCGCTTCGGCTG 706 693 1108 Antisense
GCTCCAGCTACATCAGCTGCTCAGC 564 297 1138 Antisense
CTGCTCAGCCGGATCTTTTGGATAT 467 237 1154 Antisense
GATATGTTCCAATCATCGGCAGCTC 501 425 1174 Antisense
GTCATCAAGCTGCTCCATTCGGATA 383 467 1209 Antisense
TCAGCAGGGTTACAGAGCACCGGCC 290 623 1288 Antisense
CGGCTCCTCAGCCAATGTATACGGC 589 241 1365 Antisense
GGTGCTCAGCCAATGTGGAATCCTG 324 499 1418 Antisense
CCTGCGATGGCAGCATACGGTCAAC 525 259 1439 Antisense
TGGATACGGACAACCTGTTCCACCA 5 551 1468 Antisense
AGAACGCTGCACAAGCTCAACAGGC 581 73 1539 Antisense
Sequence Source GenBank