[Home] | [Total List]

[172027_x_at]

Description g4063373 /REP_DB=GenBank Identifier /GB=AF088288.1 /PROTEIN_GB=AAC98295.1 /CHR=4 /FEA=Mapped Transcript /DEF=caspase-related protein 2A
Cluster 6grp_total > 37      4grp_total > 13      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 105.4
(-1.5)
P 		54.1
(-3)
A 		58.4
(-2.9)
A 		254.6
(3)
P 		201
B 151
(1)
P 		61.1
(-2.4)
A 		46.9
(-3)
A 		201.4
(3)
P 		155
C 156.3
(0.2)
P 		80.3
(-2.1)
A 		49.3
(-3)
A 		250.8
(3)
P 		202
avr 137.6
(-0.2) 		65.2
(-2.6) 		51.5
(-3) 		235.6
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 93.7
(2.8)
A 		64.3
(0.1)
A 		89.2
(2.4)
P 		96.4
(3)
A 		29.3
(-3)
A 		86.1
(2.1)
P 		67
B 116
(2.2)
P 		73.7
(-0.3)
A 		27.5
(-3)
A 		66.4
(-0.7)
A 		89.7
(0.7)
A 		129
(3)
P 		102
C 101.4
(1.2)
P 		120.7
(3)
A 		65.7
(-2)
A 		81.7
(-0.6)
M 		55.1
(-3)
A 		59.9
(-2.6)
A 		66
avr 103.7
(3) 		86.2
(0.7) 		60.8
(-2.6) 		81.5
(0.1) 		58
(-3) 		91.7
(1.4) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 38.4
(3)
P 		11.7
(-3)
A 		15.3
(-2.2)
A 		37.3
(2.8)
P 		27
B 48.2
(3)
P 		15.1
(-2.3)
A 		10.9
(-3)
A 		42.9
(2.1)
P 		37
C 51.7
(3)
P 		23.1
(-2)
A 		17.2
(-3)
A 		42.3
(1.4)
P 		35
avr 46.1
(3) 		16.6
(-2.6) 		14.5
(-3) 		40.8
(2) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 17.3
(0.2)
A 		22.9
(2.4)
A 		19.4
(1.1)
P 		24.5
(3)
A 		8.8
(-3)
A 		21
(1.7)
P 		16
B 40.4
(1.9)
P 		24.5
(-0.4)
A 		6.7
(-3)
A 		17.6
(-1.4)
A 		36.5
(1.3)
A 		48.1
(3)
P 		41
C 37.6
(3)
P 		36.8
(2.8)
A 		16.7
(-2.9)
A 		16.4
(-3)
M 		17.8
(-2.6)
A 		20.1
(-2)
A 		21
avr 31.8
(3) 		28.1
(1.7) 		14.3
(-3) 		19.5
(-1.2) 		21
(-0.7) 		29.7
(2.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172027_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19882
Sequence Type Exemplar sequence
Representative Public ID 4063373 NCBI
Target Description g4063373 /REP_DB=GenBank Identifier /GB=AF088288.1 /PROTEIN_GB=AAC98295.1 /CHR=4 /FEA=Mapped Transcript /DEF=caspase-related protein 2A
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028404 NCBI Caenorhabditis elegans CaSPase family member (csp-2) (csp-2) mRNA, complete cds. 11/11 None
Y73B6BL.7 ENSEMBL cdna:known chromosome:CEL140:IV:6307723:6315703:1 gene:Y73B6BL.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060610 4/11 Cross Hyb Matching Probes A 
GENEFINDER00000036901 2/11 Cross Hyb Matching Probes None
SNAP00000032031 6/11 Cross Hyb Matching Probes None
GENEFINDER00000032093 6/11 Cross Hyb Matching Probes None
Y47H9C.6 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6307726-6315709(+) 99.96 100.0
Public Domain and Genome References
Gene Title
Gene Symbol csp-2
Ensembl Y73B6BL.7
Entrez Gene 177391 Entrez gene
SwissProt Q9Y055 EMBL-EBI
WormBase CE28270 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
30693 caspase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM44398 Caspase protein 2 [Caenorhabditis elegans] ref|NP_001023575.1| CaSPase family member (csp-2) [Caenorhabditis elegans] gb|AAC98295.1| caspase-related protein 2A [Caenorhabditis elegans] 0.0
blast CAD44516 VAB-10B protein [Caenorhabditis elegans] 1.0E-148
blast CAH04759 Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04743.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] emb|CAH04711.1| Hypothetical protein ZK1151.1g [Caenorhabditis elegans] ref|NP_001021859.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR001309 EMBL-EBI Caspase-1, p20 2.8E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023575.1 1 37-59
Y73B6BL.7 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:172027_X_AT
gagcagtccgctgtgatggattcatcgacaacttttttgatcgttttccaaagttcttcc
agtttatgaaatctaaattcccatcacaccaaacctcgtcgtcgcaagcagatttattgg
tttctttctcaacatctcctggcttcctatcattcagagatgaaaccaaaggcacatggt
atattcaggaactttatcgagtgattattgagaacgcgaaagatactcatttggcggatc
tcctaatggagaccaacagacgagtcgtggagaaatatgaggcagataaagtagtgatcg
tgtgtaagcaggctcctgagttctggtcgaggttcacaaaacaactattcttcgacgtct
agaaatgacgtgttttgatgtcaatggcctcggtgatcagtatgctctcagtacatgttt
caacagttctttcaattgtcacacatttttcccgctgctacgatgaattacaatacctat
tcaatttccaatatcagattttctatcaattgtgatgatgtcatgctagccttattcata
tttaaaatacccgtttgtcaactcttttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGTCCGCTGTGATGGATTCAT 337 389 2134 Antisense
TGATCGTTTTCCAAAGTTCTTCCAG 487 561 2171 Antisense
AACCTCGTCGTCGCAAGCAGATTTA 97 147 2225 Antisense
TATTGGTTTCTTTCTCAACATCTCC 127 667 2248 Antisense
CTCCTGGCTTCCTATCATTCAGAGA 220 235 2269 Antisense
GTAGTGATCGTGTGTAAGCAGGCTC 139 437 2424 Antisense
TAAGCAGGCTCCTGAGTTCTGGTCG 450 637 2438 Antisense
CAATGGCCTCGGTGATCAGTATGCT 423 181 2515 Antisense
TCAATTGTCACACATTTTTCCCGCT 24 635 2565 Antisense
TTTTCCCGCTGCTACGATGAATTAC 582 675 2580 Antisense
TACCCGTTTGTCAACTCTTTTGGAT 422 649 2681 Antisense
Sequence Source GenBank