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[172026_x_at]

Description g4680194 /REP_DB=GenBank Identifier /GB=AF112356.1 /PROTEIN_GB=AAD27559.1 /CHR=X /FEA=Mapped Transcript /DEF=venom allergen-like protein
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 61      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1905
1 2 3 4 range
A 1837.5
(3)
P 		1498.8
(1.8)
P 		1408.8
(1.5)
P 		80.4
(-3)
A 		1757
B 1961.7
(3)
P 		1453.2
(1.4)
P 		1809.2
(2.5)
P 		56.5
(-3)
A 		1905
C 1829.2
(3)
P 		1149
(0.7)
P 		1240.2
(1)
P 		69.6
(-3)
A 		1760
avr 1876.1
(3) 		1367
(1.3) 		1486.1
(1.7) 		68.8
(-3) 		1807

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1152
1 2 3 4 5 6 range
A 1088.1
(0.5)
P 		1466.3
(2.8)
P 		1500.8
(3)
P 		1015.5
(0.1)
P 		495.2
(-3)
P 		506.8
(-2.9)
P 		1006
B 818.6
(-0.9)
P 		1070
(0.7)
P 		1435.7
(3)
P 		923.3
(-0.3)
P 		495.6
(-3)
P 		508.1
(-2.9)
P 		940
C 983.1
(-0.6)
P 		911.5
(-1)
P 		1647.6
(3)
P 		819.8
(-1.5)
P 		702.4
(-2.2)
P 		547.1
(-3)
P 		1101
avr 963.3
(-0.4) 		1149.3
(0.7) 		1528
(3) 		919.5
(-0.6) 		564.4
(-2.7) 		520.7
(-3) 		1007
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 657
1 2 3 4 range
A 669
(3)
P 		325.4
(-0.1)
P 		368.3
(0.3)
P 		11.8
(-3)
A 		657
B 625.6
(3)
P 		358.9
(0.4)
P 		419.2
(1)
P 		12
(-3)
A 		614
C 605.5
(3)
P 		330.3
(0.2)
P 		432.2
(1.2)
P 		11.7
(-3)
A 		594
avr 633.4
(3) 		338.2
(0.2) 		406.6
(0.8) 		11.8
(-3) 		622

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 200.6
(-1.8)
P 		521.5
(3)
P 		326.9
(0.1)
P 		257.5
(-1)
P 		149.4
(-2.6)
P 		123.4
(-3)
P 		398
B 284.8
(0.4)
P 		356.1
(3)
P 		348.6
(2.7)
P 		244.5
(-1)
P 		201.4
(-2.6)
P 		189.5
(-3)
P 		167
C 364.4
(1.7)
P 		278.1
(-0.3)
P 		419.3
(3)
P 		164.9
(-3)
P 		227.3
(-1.5)
P 		183.1
(-2.6)
P 		254
avr 283.3
(0.2) 		385.2
(3) 		364.9
(2.4) 		222.3
(-1.4) 		192.7
(-2.3) 		165.3
(-3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172026_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20013
Sequence Type Exemplar sequence
Representative Public ID 4680194 NCBI
Target Description g4680194 /REP_DB=GenBank Identifier /GB=AF112356.1 /PROTEIN_GB=AAD27559.1 /CHR=X /FEA=Mapped Transcript /DEF=venom allergen-like protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029382(11), NM_171818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029382 NCBI Caenorhabditis elegans Venom-Allergen-like Protein family member (vap-1) (vap-1) mRNA, complete cds. 11/11 None
NM_171818 NCBI Caenorhabditis elegans Venom-Allergen-like Protein family member (vap-1) (vap-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000033136 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17393075:17396370:-1 11/11 None
SNAP00000033125 ENSEMBL cdna:SNAP chromosome:CEL140:X:17393903:17396370:-1 11/11 None
F11C7.3b ENSEMBL cdna:known chromosome:CEL140:X:17393701:17396370:-1 gene:F11C7.3 11/11 A 
F11C7.3a ENSEMBL cdna:known chromosome:CEL140:X:17393903:17396370:-1 gene:F11C7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17393851-17396369(-) 100.0 100.0
Public Domain and Genome References
Ensembl F11C7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54195 Venom-allergen-like protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024553.1| Venom-Allergen-like Protein family member (vap-1) [Caenorhabditis elegans] 0.0
blast AAC69015 Venom-allergen-like protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_741951.1| Venom-Allergen-like Protein family member (vap-1) [Caenorhabditis elegans] gb|AAD27559.1| venom allergen-like protein [Caenorhabditis elegans] 0.0
blast CAE69675 Hypothetical protein CBG15925 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.8E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.4E-50
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 3.6E-48
Sequence
Target Sequence 
>C. ELEGANS:172026_X_AT
ggcgcgtcaaaacttcttggacacccataacaaattgcgtacaagccttgccaagggact
tgaagctgatggaattgccgctggagcatttgcaccaatggccaagcaaatgccaaaact
ggtaaaatacagctgcacagttgaagcaaacgccagaacatgggcaaaaggatgccttta
ccagcattcaacaagcgcacagagaccaggactcggtgaaaatctttatatgatcagcat
taacaacatgcctaaaattcaaaccgcggaggactcctcaaaggcttggtggtccgagtt
gaaagacttcggagtcggttctgacaacattctgacccaagcagtttttgatcgtggcgt
tggacattacacacaaatggcatgggaaggaactactgaaattggatgttttgtggagaa
ttgtccaacattcacttattccgtatgccaatatggtccagcgggaaactacatgaacca
actaatctataccaagggctcaccatgcacagctgacgccgattgcccaggaacccagac
atgcagtgtcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCGTCAAAACTTCTTGGACACC 113 543 714 Antisense
GAATTGCCGCTGGAGCATTTGCACC 58 325 785 Antisense
GCCTTTACCAGCATTCAACAAGCGC 462 281 887 Antisense
AAGCGCACAGAGACCAGGACTCGGT 404 149 906 Antisense
GACTCCTCAAAGGCTTGGTGGTCCG 389 371 985 Antisense
AGACTTCGGAGTCGGTTCTGACAAC 390 71 1017 Antisense
TTCTGACAACATTCTGACCCAAGCA 700 693 1032 Antisense
AAGCAGTTTTTGATCGTGGCGTTGG 9 151 1052 Antisense
ATTGTCCAACATTCACTTATTCCGT 186 5 1133 Antisense
TCTATACCAAGGGCTCACCATGCAC 165 615 1199 Antisense
GGAACCCAGACATGCAGTGTCGCTG 202 531 1243 Antisense
Sequence Source GenBank