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[172025_x_at]

Description g5805381 /REP_DB=GenBank Identifier /GB=AF173372.1 /PROTEIN_GB=AAD51972.1 /CHR=2 /FEA=Mapped Transcript /DEF=transmembrane protein NRF-6
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 34      4grp_high_8_8 > 56      6grp_highest_nonorm > 63      6grp_total > 83      4grp_total > 63      6grp_highest_sub > 05      6grp_cgc > 87      6grp_high1_sub > 05      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 693.2
(3)
P 		492.9
(-1.9)
P 		621.6
(1.3)
P 		446.8
(-3)
P 		246
B 669
(-1)
P 		620.1
(-3)
P 		767.3
(3)
P 		672.8
(-0.9)
P 		147
C 793.3
(3)
P 		623.7
(-1)
P 		714.3
(1.1)
P 		541
(-3)
P 		252
avr 718.5
(3) 		578.9
(-2.1) 		701.1
(2.4) 		553.5
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 398.8
(-3)
P 		577.2
(-0.1)
P 		642.8
(1)
P 		557.9
(-0.4)
P 		765.1
(3)
P 		493.9
(-1.4)
P 		366
B 458.2
(-3)
P 		486.3
(-2.5)
P 		605.2
(-0.2)
P 		643.4
(0.5)
P 		773.3
(3)
P 		554.2
(-1.2)
P 		315
C 455
(-3)
P 		492.3
(-2.2)
P 		518.5
(-1.7)
P 		654.6
(1)
P 		750.8
(3)
P 		634.9
(0.6)
P 		296
avr 437.3
(-3) 		518.6
(-1.5) 		588.8
(-0.2) 		618.6
(0.3) 		763.1
(3) 		561
(-0.7) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 252.4
(3)
P 		107
(-1.7)
P 		162.5
(0.1)
P 		65.4
(-3)
P 		187
B 213.3
(3)
P 		153.1
(-2.2)
P 		177.8
(-0)
P 		143.4
(-3)
P 		70
C 262.6
(3)
P 		179.3
(0.1)
P 		248.9
(2.5)
P 		91.2
(-3)
P 		171
avr 242.8
(3) 		146.5
(-1) 		196.4
(1.1) 		100
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 73.5
(-3)
P 		205.3
(2)
P 		140
(-0.5)
P 		141.5
(-0.4)
P 		230.9
(3)
P 		120.2
(-1.2)
P 		157
B 159.4
(-2.6)
P 		161.9
(-2.5)
P 		146.9
(-3)
P 		170.4
(-2.2)
P 		314.2
(3)
P 		206.7
(-0.9)
P 		167
C 168.6
(-1)
P 		150.2
(-2)
P 		132
(-3)
P 		131.6
(-3)
P 		243
(3)
P 		212.5
(1.4)
P 		111
avr 133.8
(-3) 		172.5
(-1.2) 		139.6
(-2.7) 		147.8
(-2.3) 		262.7
(3) 		179.8
(-0.9) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172025_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19706
Sequence Type Exemplar sequence
Representative Public ID 5805381 NCBI
Target Description g5805381 /REP_DB=GenBank Identifier /GB=AF173372.1 /PROTEIN_GB=AAD51972.1 /CHR=2 /FEA=Mapped Transcript /DEF=transmembrane protein NRF-6
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063279 NCBI Caenorhabditis elegans Nose Resistant to Fluoxetine family member (nrf-6) (nrf-6) mRNA, complete cds. 11/11 A 
SNAP00000039305 ENSEMBL cdna:SNAP chromosome:CEL140:II:8028974:8032624:-1 11/11 None
GENEFINDER00000039312 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8028974:8032624:-1 11/11 None
C08B11.4 ENSEMBL cdna:known chromosome:CEL140:II:8028876:8032630:-1 gene:C08B11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8028872-8032627(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nrf-6
Ensembl C08B11.4
Entrez Gene 174287 Entrez gene
SwissProt Q09225 EMBL-EBI
WormBase CE27798 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624885_AT dm
DROSGENOME1:144989_AT dm
DROSGENOME1:144988_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86669 Hypothetical protein C08B11.4 [Caenorhabditis elegans] ref|NP_495680.1| Nose Resistant to Fluoxetine family member (nrf-6) [Caenorhabditis elegans] gb|AAD51972.1| transmembrane protein NRF-6 [Caenorhabditis elegans] sp|Q09225|NRF6_CAEEL Nose resistant to fluoxetine protein 6 precursor (Protein nrf-6) 0.0
blast T19074 hypothetical protein C08B11.4 - Caenorhabditis elegans 0.0
blast CAE67775 Hypothetical protein CBG13350 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495680.1 11 309-331,378-400,423-445,476-498,536-558,565-587,614-636,653-675,685-707,720-742,762-784
C08B11.4 11 309-331,378-400,423-445,476-498,536-558,565-587,614-636,653-675,685-707,720-742,762-784
SNAP00000039305 11 309-331,378-400,423-445,476-498,536-558,565-587,614-636,653-675,685-707,720-742,762-784
GENEFINDER00000039312 11 309-331,378-400,423-445,476-498,536-558,565-587,614-636,653-675,685-707,720-742,762-784
Sequence
Target Sequence 
>C. ELEGANS:172025_X_AT
ggtgcacttcaacagttcttggattatactctgtatttggcttgtactggtttgcaaaga
cgggagatatttctaaaccttgggagattttgtacaccatttttggaacaccagcatatg
ctttagcattgggatgggttgttttcgcgtgtacaactggaaatggtggacctgtagaca
caattctctcttggagactatttgttccgttatctaaaattactttttgtgcatatttgc
ttcatccaatcatgcttcaaatctacaatttgagtcgaccacagcccttccattttacca
cattcattcaaatgattcggtacacagtcgaagctgtttttgcttcctacacaattgcat
tcttcttttctctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCACTTCAACAGTTCTTGGATT 366 499 1991 Antisense
GTATTTGGCTTGTACTGGTTTGCAA 687 451 2023 Antisense
GGGAGATTTTGTACACCATTTTTGG 407 495 2072 Antisense
ATTGGGATGGGTTGTTTTCGCGTGT 415 3 2118 Antisense
GGACCTGTAGACACAATTCTCTCTT 147 523 2158 Antisense
GGAGACTATTTGTTCCGTTATCTAA 468 517 2183 Antisense
TTTGCTTCATCCAATCATGCTTCAA 580 667 2226 Antisense
TACAATTTGAGTCGACCACAGCCCT 616 641 2254 Antisense
CTTCCATTTTACCACATTCATTCAA 109 219 2277 Antisense
CTGTTTTTGCTTCCTACACAATTGC 215 237 2324 Antisense
ACAATTGCATTCTTCTTTTCTCTAG 163 115 2341 Antisense
Sequence Source GenBank