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[172023_x_at]

Description g6681679 /REP_DB=GenBank Identifier /GB=AB017106.1 /PROTEIN_GB=BAA88837.1 /CHR=4 /FEA=Mapped Transcript /DEF=Kinesin like protein (klp-11)
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 51      6grp_total > 24      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 1134.9
(3)
P 		547.4
(-2.8)
P 		610.1
(-2.1)
P 		523
(-3)
P 		612
B 760.8
(3)
P 		680.5
(1.3)
P 		473.1
(-3)
P 		491.5
(-2.6)
P 		288
C 1163.1
(3)
P 		603.3
(-2.1)
P 		548.6
(-2.6)
P 		501.2
(-3)
P 		662
avr 1019.6
(3) 		610.4
(-1.8) 		543.9
(-2.5) 		505.2
(-3) 		514

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 562
1 2 3 4 5 6 range
A 787
(3)
P 		723.8
(2.2)
P 		764.9
(2.7)
P 		485.2
(-0.8)
P 		310.1
(-3)
P 		445.4
(-1.3)
P 		477
B 797.5
(3)
P 		711
(2)
P 		492.8
(-0.4)
P 		584.3
(0.6)
P 		253.9
(-3)
P 		448.5
(-0.9)
P 		544
C 710.6
(3)
P 		706.4
(2.9)
P 		467
(-0.1)
P 		483.8
(0.1)
P 		235.6
(-3)
P 		398.3
(-0.9)
P 		475
avr 765
(3) 		713.7
(2.4) 		574.9
(0.7) 		517.8
(0) 		266.5
(-3) 		430.7
(-1) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 413.2
(3)
P 		118.8
(-2.2)
P 		159.5
(-1.5)
P 		76.6
(-3)
P 		337
B 242.6
(3)
P 		168.1
(-0.2)
P 		109.6
(-2.8)
P 		104.7
(-3)
P 		138
C 385
(3)
P 		173.5
(-1.2)
P 		191.2
(-0.9)
P 		84.5
(-3)
P 		301
avr 346.9
(3) 		153.5
(-1.5) 		153.4
(-1.5) 		88.6
(-3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 145.1
(-1.1)
P 		257.4
(3)
P 		166.6
(-0.3)
P 		123.1
(-1.9)
P 		93.6
(-3)
P 		108.4
(-2.5)
P 		164
B 277.5
(3)
P 		236.7
(1.6)
P 		119.7
(-2.4)
P 		154.7
(-1.2)
P 		103.2
(-3)
P 		167.3
(-0.8)
P 		174
C 263.4
(3)
P 		215.5
(1.5)
P 		118.9
(-1.6)
P 		97.3
(-2.3)
P 		76.2
(-3)
P 		133.3
(-1.2)
P 		187
avr 228.7
(2.7) 		236.5
(3) 		135.1
(-1.2) 		125
(-1.6) 		91
(-3) 		136.3
(-1.1) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172023_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19876
Sequence Type Exemplar sequence
Representative Public ID 6681679 NCBI
Target Description g6681679 /REP_DB=GenBank Identifier /GB=AB017106.1 /PROTEIN_GB=BAA88837.1 /CHR=4 /FEA=Mapped Transcript /DEF=Kinesin like protein (klp-11)
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027968 NCBI Caenorhabditis elegans F20C5.2b (kinesin) mRNA, complete cds. 11/11 None
F20C5.2b ENSEMBL cdna:known chromosome:CEL140:IV:8755046:8761978:-1 gene:F20C5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022216 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022226 7/11 Cross Hyb Matching Probes None
AB017106 10/11 Negative Strand Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177685 2 1 NM_001027968 172023_x_at (11), 173453_s_at (11), 189816_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8755022-8762046(-) 99.21 100.0
Public Domain and Genome References
Ensembl F20C5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD36488 Hypothetical protein F20C5.2b [Caenorhabditis elegans] ref|NP_001023139.1| F20C5.2b [Caenorhabditis elegans] 0.0
blast CAA92295 Hypothetical protein F20C5.2a [Caenorhabditis elegans] ref|NP_741473.1| F20C5.2a [Caenorhabditis elegans] 0.0
blast AAF99085 KRP95 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023139.1 1 1107-1129
F20C5.2b 1 1107-1129
Sequence
Target Sequence 
>C. ELEGANS:172023_X_AT
ggattccgatgagtcttcttctgatgattccgatgctgaatttggtgctgagtgttctgt
tgatggtgttgttgaaacaccgagaacacgtcgaaagttgatttcagttagaaggttgaa
agacagaaatcgaaagaaattcaaatgttccatgaaacgtctacatccaccaacttcacc
atcaaaaatctcaaaaagtgcttcaagttcatccgatcttacctcattcttctgtatctc
ttcaccatatttctacctcctcatcgcattcctattccgatttcttatatttttatcaga
tacttttctgccgatcttctgatctttaaaacctaattcgaaatttcgaatttagtcgtc
gttgcgggctttttcaggccttcttgtagtctcgaacagttttttaataagaaaatatca
ctattgatacggttacctttcacattattagtgctgattgaaaccaaacttttgaacatt
gtcagaaatactgtttcccttttctgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCCGATGAGTCTTCTTCTGAT 387 509 3135 Antisense
GTCTTCTTCTGATGATTCCGATGCT 603 467 3147 Antisense
GTTCCATGAAACGTCTACATCCACC 442 441 3281 Antisense
GCTTCAAGTTCATCCGATCTTACCT 4 305 3334 Antisense
TGTATCTCTTCACCATATTTCTACC 236 561 3367 Antisense
CTCATCGCATTCCTATTCCGATTTC 561 229 3394 Antisense
TCAGATACTTTTCTGCCGATCTTCT 156 623 3430 Antisense
GAATTTAGTCGTCGTTGCGGGCTTT 636 323 3482 Antisense
TTTCAGGCCTTCTTGTAGTCTCGAA 127 671 3506 Antisense
GATACGGTTACCTTTCACATTATTA 103 423 3560 Antisense
GAAATACTGTTTCCCTTTTCTGTGT 526 363 3619 Antisense
Sequence Source GenBank