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[172022_x_at]

Description g7939594 /REP_DB=GenBank Identifier /GB=AB042633.1 /PROTEIN_GB=BAA95694.1 /CHR=1 /FEA=Mapped Transcript /DEF=bladder cancer related protein
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 252.7
(-3)
P 		306
(-0.5)
P 		382.1
(3)
P 		264.9
(-2.4)
P 		129
B 280.7
(-1.1)
P 		254
(-2.2)
P 		383.7
(3)
P 		233.3
(-3)
P 		150
C 273.3
(-3)
P 		307.4
(1.1)
P 		322.7
(3)
P 		285.3
(-1.5)
P 		49
avr 268.9
(-2.5) 		289.1
(-1.4) 		362.8
(3) 		261.2
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 234.9
(-3)
P 		255
(-2.3)
P 		403.1
(3)
P 		325.9
(0.2)
P 		344.3
(0.9)
P 		357.5
(1.4)
P 		168
B 272.7
(-2.7)
P 		264
(-3)
P 		298.2
(-1.7)
P 		294.6
(-1.8)
P 		342.8
(0)
P 		420.3
(3)
P 		156
C 311.7
(-1.5)
P 		264
(-2.7)
P 		253
(-3)
P 		321.3
(-1.2)
P 		298.7
(-1.8)
P 		485
(3)
P 		232
avr 273.1
(-2.5) 		261
(-3) 		318.1
(-0.9) 		313.9
(-1) 		328.6
(-0.5) 		420.9
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 92
(2.2)
P 		66.4
(-0.3)
P 		99.9
(3)
P 		38.8
(-3)
P 		61
B 89.5
(3)
P 		62.7
(-1)
P 		88.9
(2.9)
P 		49.7
(-3)
P 		40
C 90.5
(1)
P 		88.4
(0.8)
P 		112.5
(3)
P 		48.1
(-3)
P 		64
avr 90.7
(1.9) 		72.5
(-0) 		100.4
(3) 		45.5
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 43.3
(-3)
P 		90.7
(1.7)
P 		87.8
(1.4)
P 		82.7
(0.9)
P 		103.9
(3)
P 		87
(1.3)
P 		61
B 94.9
(-1.4)
P 		87.9
(-1.9)
P 		72.4
(-3)
P 		78
(-2.6)
P 		139.3
(1.8)
P 		156.7
(3)
P 		84
C 115.5
(0.1)
P 		80.6
(-2)
P 		64.4
(-3)
P 		64.6
(-3)
P 		96.6
(-1)
P 		162.4
(3)
P 		98
avr 84.6
(-2) 		86.4
(-1.9) 		74.9
(-3) 		75.1
(-3) 		113.3
(0.8) 		135.4
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172022_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19638
Sequence Type Exemplar sequence
Representative Public ID 7939594 NCBI
Target Description g7939594 /REP_DB=GenBank Identifier /GB=AB042633.1 /PROTEIN_GB=BAA95694.1 /CHR=1 /FEA=Mapped Transcript /DEF=bladder cancer related protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058470 NCBI Caenorhabditis elegans Y73E7A.6 (Y73E7A.6) mRNA, complete cds. 11/11 None
Y73E7A.6 ENSEMBL cdna:known chromosome:CEL140:I:1607700:1610037:-1 gene:Y73E7A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005638 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005646 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1607705-1610037(-) 91.0 98.77
Public Domain and Genome References
Gene Title
Ensembl Y73E7A.6
Entrez Gene 171724 Entrez gene
SwissProt Q9GUM4 EMBL-EBI
WormBase CE27537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23385 Hypothetical protein Y73E7A.6 [Caenorhabditis elegans] ref|NP_490871.1| Y73E7A.6 [Caenorhabditis elegans] dbj|BAA95694.1| bladder cancer related protein [Caenorhabditis elegans] 4.0E-51
blast CAE74426 Hypothetical protein CBG22159 [Caenorhabditis briggsae] 3.0E-48
blast EAL29480 GA18490-PA [Drosophila pseudoobscura] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR009598 EMBL-EBI Bladder cancer-related BC10 1.1E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490871.1 1 17-39
Y73E7A.6 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:172022_X_AT
tgcaatggctgataccggtgctgctgataccgaagcactggattcatccgatgttcctcg
tggagcaggcggtcttcatgtggttctacattgtcggattctttttggagagaaggccat
gtcacatttgctctggaatcttcttcatcgccctctcacttctctgctattcggaccccg
atagctgcatattctggccaacgtgtaccaagaagctcaacggagaagtgtgcacctacg
tcttccgtgatcgtctctaaatatcctaaatctacacatatttttttttctctccatttc
tctgaatatcttccgatttgttacgggcgttccctctctctctagtttttcctctatttt
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATGGCTGATACCGGTGCTGCT 242 577 23 Antisense
GATACCGAAGCACTGGATTCATCCG 104 425 48 Antisense
TTCATCCGATGTTCCTCGTGGAGCA 605 687 65 Antisense
AGAAGGCCATGTCACATTTGCTCTG 430 75 133 Antisense
TTTGCTCTGGAATCTTCTTCATCGC 94 669 149 Antisense
CTGCATATTCTGGCCAACGTGTACC 539 237 207 Antisense
GGAGAAGTGTGCACCTACGTCTTCC 503 517 244 Antisense
CGTCTTCCGTGATCGTCTCTAAATA 293 247 261 Antisense
CTACACATATTTTTTTTTCTCTCCA 263 227 294 Antisense
TTTTCTCTCCATTTCTCTGAATATC 337 677 308 Antisense
TCTCTCTAGTTTTTCCTCTATTTTT 46 613 359 Antisense
Sequence Source GenBank