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[172021_x_at]

Description g3047192 /REP_DB=GenBank Identifier /GB=AF031836.1 /PROTEIN_GB=AAC13672.1 /CHR=3 /FEA=Mapped Transcript /DEF=GLY5b
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 03      4grp_total > 57      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 296.3
(-2.9)
P 		294.6
(-3)
P 		397.1
(3)
P 		375.7
(1.7)
P 		103
B 320.8
(-0.7)
P 		335.8
(-0.2)
P 		441.3
(3)
P 		246.4
(-3)
P 		195
C 314.8
(-1.2)
P 		485.5
(3)
P 		400
(0.9)
P 		241.7
(-3)
P 		244
avr 310.6
(-1.9) 		372
(1) 		412.8
(3) 		287.9
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 396.1
(2.8)
P 		404.8
(3)
P 		324.7
(0.8)
P 		280.4
(-0.3)
P 		402.8
(2.9)
P 		181.8
(-3)
P 		223
B 339.3
(-2.1)
P 		325.4
(-3)
P 		402.8
(1.8)
P 		422.1
(3)
P 		350.7
(-1.4)
P 		330.4
(-2.7)
P 		97
C 472
(3)
P 		328.8
(-0.7)
P 		304.5
(-1.4)
P 		446.9
(2.3)
P 		348.2
(-0.2)
P 		241.6
(-3)
P 		230
avr 402.5
(3) 		353
(1) 		344
(0.7) 		383.1
(2.2) 		367.2
(1.6) 		251.3
(-3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 107.9
(3)
P 		64
(-2)
P 		103.8
(2.5)
P 		55
(-3)
P 		53
B 102.3
(3)
P 		82.9
(0.7)
P 		102.3
(3)
P 		52.5
(-3)
P 		50
C 104.2
(0.9)
P 		139.6
(3)
P 		139.4
(3)
P 		40.8
(-3)
P 		99
avr 104.8
(2.1) 		95.5
(1.2) 		115.2
(3) 		49.4
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 73
(-1.3)
P 		144
(3)
P 		70.7
(-1.4)
P 		71.1
(-1.4)
P 		121.6
(1.7)
P 		44.3
(-3)
P 		100
B 118.1
(-0.3)
P 		108.3
(-1.6)
P 		97.8
(-3)
P 		111.8
(-1.1)
P 		142.5
(3)
P 		123.2
(0.4)
P 		45
C 174.9
(3)
P 		100.3
(-1.6)
P 		77.5
(-3)
P 		89.9
(-2.2)
P 		112.7
(-0.8)
P 		80.9
(-2.8)
P 		97
avr 122
(2.5) 		117.5
(1.9) 		82
(-3) 		90.9
(-1.8) 		125.6
(3) 		82.8
(-2.9) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172021_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19794
Sequence Type Exemplar sequence
Representative Public ID 3047192 NCBI
Target Description g3047192 /REP_DB=GenBank Identifier /GB=AF031836.1 /PROTEIN_GB=AAC13672.1 /CHR=3 /FEA=Mapped Transcript /DEF=GLY5b
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027680(9), NM_001027679(11), NM_001027681(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027680 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 9/11 None
NM_001027679 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 11/11 None
NM_001027681 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 9/11 None
Y39E4B.12b ENSEMBL cdna:known chromosome:CEL140:III:13186908:13204404:1 gene:Y39E4B.12 9/11 A 
Y39E4B.12a.2 ENSEMBL cdna:known chromosome:CEL140:III:13186908:13204456:1 gene:Y39E4B.12 11/11 A 
Y39E4B.12a.1 ENSEMBL cdna:known chromosome:CEL140:III:13187625:13204456:1 gene:Y39E4B.12 11/11 A 
Y39E4B.12c ENSEMBL cdna:known chromosome:CEL140:III:13187632:13204410:1 gene:Y39E4B.12 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012032 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13186906-13204225(+) 96.58 100.0
Public Domain and Genome References
Ensembl Y39E4B.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42368 Hypothetical protein Y39E4B.12b [Caenorhabditis elegans] ref|NP_001022851.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] 0.0
blast AAC13671 GLY5a; ppGaNTase [Caenorhabditis elegans] 0.0
blast CAB54435 Hypothetical protein Y39E4B.12a [Caenorhabditis elegans] ref|NP_001022850.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] sp|Q95ZJ1|GALT5_CAEEL Polypeptide N-acetylgalactosaminyltransferase 5 (Protein-UDP acetylgalactosaminyltransferase 5) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5) (pp-GaNTase 5) 0.0
blast AAC13672 GLY5b; ppGaNTase [Caenorhabditis elegans] 0.0
blast CAC42369 Hypothetical protein Y39E4B.12c [Caenorhabditis elegans] ref|NP_001022852.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] 0.0
blast AAC13673 GLY5c; ppGaNTase [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 2.0E-9
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 9.1E-40
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 3.5E-9
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 6.6E-11
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022851.1 1 12-31
NP_001022850.1 1 12-31
NP_001022852.1 1 12-31
Y39E4B.12b 1 12-31
Y39E4B.12a.2 1 12-31
Y39E4B.12a.1 1 12-31
Y39E4B.12c 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:172021_X_AT
tcggtacgtaccagtgtcacggtcagggcggaaatcagtactggatgctgtcgaaagacg
gagaaattcgacgagacgaatcgtgtgttgattatgccggttctgatgttatggtattcc
catgtcatggaatgaagggaaatcaagaatggcggtacaatcatgatactggccgactcc
agcacgctgtctcacaaaaatgcctaggcatgacaaaggatggggcgaagcttgagatgg
tcgcctgccagtatgatgatccttatcaacactggaaattcaaggaatacaatgaagcaa
aggccatcgagcatggagccaaaccgccgagctaattatttttttttattttcaaatttt
ttcaaaaaaaagtttagttgttctcatttcttccctccatttgctcctctagtattcttt
tctcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTACGTACCAGTGTCACGGTCA 517 543 1641 Antisense
GTCACGGTCAGGGCGGAAATCAGTA 594 463 1656 Antisense
GTGTGTTGATTATGCCGGTTCTGAT 160 489 1723 Antisense
CGGTTCTGATGTTATGGTATTCCCA 50 245 1738 Antisense
TACAATCATGATACTGGCCGACTCC 566 641 1796 Antisense
TCCAGCACGCTGTCTCACAAAAATG 163 589 1818 Antisense
GCGAAGCTTGAGATGGTCGCCTGCC 198 289 1865 Antisense
TCGCCTGCCAGTATGATGATCCTTA 415 599 1881 Antisense
CCATCGAGCATGGAGCCAAACCGCC 102 271 1944 Antisense
GCCAAACCGCCGAGCTAATTATTTT 37 257 1958 Antisense
CTCCTCTAGTATTCTTTTCTCGATA 589 233 2044 Antisense
Sequence Source GenBank