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[172020_x_at]

Description g4558870 /REP_DB=GenBank Identifier /GB=AF104917.1 /PROTEIN_GB=AAD22772.1 /CHR=3 /FEA=Mapped Transcript /DEF=LIN-36
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 92      6grp_total > 59      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 289.3
(3)
P 		127.1
(-3)
P 		170.4
(-1.4)
P 		132.6
(-2.8)
P 		162
B 328.3
(3)
P 		178.9
(-3)
P 		204.3
(-2)
P 		301
(1.9)
P 		149
C 277.8
(3)
P 		208.3
(-1.2)
P 		277.8
(3)
P 		179.1
(-3)
P 		99
avr 298.5
(3) 		171.4
(-3) 		217.5
(-0.8) 		204.2
(-1.5) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 380.4
(1)
P 		305.5
(-0.6)
P 		194.6
(-3)
P 		216.6
(-2.5)
P 		424.6
(2)
P 		471.5
(3)
P 		277
B 399.2
(0.1)
P 		402
(0.1)
P 		154.7
(-3)
P 		285.1
(-1.3)
P 		334.8
(-0.7)
P 		627.6
(3)
P 		473
C 421.2
(0.6)
P 		333.2
(-0.8)
P 		188.1
(-3)
P 		203.4
(-2.8)
P 		335.3
(-0.7)
P 		577.7
(3)
P 		390
avr 400.3
(0.5) 		346.9
(-0.3) 		179.1
(-3) 		235
(-2.1) 		364.9
(-0.1) 		558.9
(3) 		380
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 105.3
(3)
P 		27.6
(-2.4)
P 		44.5
(-1.2)
P 		19.4
(-3)
P 		86
B 104.7
(3)
P 		44.2
(-3)
P 		47.3
(-2.7)
P 		64.1
(-1)
P 		61
C 91.9
(2.6)
P 		59.9
(-0.3)
P 		96.8
(3)
P 		30.2
(-3)
P 		67
avr 100.6
(3) 		43.9
(-2.4) 		62.9
(-0.6) 		37.9
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 70.1
(-1.1)
P 		108.7
(1.6)
P 		42.4
(-3)
P 		54.9
(-2.1)
P 		128.1
(3)
P 		114.8
(2.1)
P 		86
B 138.9
(0.1)
P 		133.8
(-0.1)
P 		37.6
(-3)
P 		75.5
(-1.8)
P 		136
(0)
P 		234
(3)
P 		196
C 156.1
(1.5)
P 		101.7
(-0.6)
P 		47.9
(-2.7)
P 		40.9
(-3)
P 		108.5
(-0.3)
P 		193.4
(3)
P 		153
avr 121.7
(0.4) 		114.7
(0.1) 		42.6
(-3) 		57.1
(-2.4) 		124.2
(0.5) 		180.7
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172020_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19826
Sequence Type Exemplar sequence
Representative Public ID 4558870 NCBI
Target Description g4558870 /REP_DB=GenBank Identifier /GB=AF104917.1 /PROTEIN_GB=AAD22772.1 /CHR=3 /FEA=Mapped Transcript /DEF=LIN-36
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066346 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-36) (lin-36) mRNA, complete cds. 11/11 A 
F44B9.6 ENSEMBL cdna:known chromosome:CEL140:III:8016572:8020797:-1 gene:F44B9.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005267 3/11 Cross Hyb Matching Probes None
GENEFINDER00000005279 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8016568-8020797(-) 98.84 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-36
Ensembl F44B9.6
Entrez Gene 176128 Entrez gene
SwissProt P34427 EMBL-EBI
WormBase CE30992 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28031 Abnormal cell lineage protein 36 [Caenorhabditis elegans] ref|NP_498747.2| abnormal cell LINeage family member (lin-36) [Caenorhabditis elegans] gb|AAD22772.1| LIN-36 [Caenorhabditis elegans] sp|P34427|LIN36_CAEEL Abnormal cell lineage protein 36 (Protein lin-36) 0.0
blast S44812 F44B9.6 protein - Caenorhabditis elegans 0.0
blast CAE75048 Hypothetical protein CBG22961 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172020_X_AT
gattatcaaattttctactctaacgatggagcacaagtgctcaccaaaaaagatccaaaa
tggcgtgaacttcaacaacaacaacaacaacaacaacagcagcaagaacaatttccagga
caaggatcatcggattctcaacaataattatttttaattatcaaagaaagtgcctcaaaa
ttcaagattcaaaagtcaattgtcctttcgaggatcgccccacatttctttcatgtgaac
tatctctgttttatatccacagaagttatcccattttactttcattcgaaattcttgaaa
tctgataaaaactccgactaggatagattttcgtctagatttttaggattttcacattta
cttttttcccattttttaccccccctcccccctataatttactttccaaaattaatagtt
tgttttactttccataagcccccgccccctccccaaaaaccacactttttctatcataaa
ttaatctgaattattcacaaaaaatgagccaaagtctatttaaacgtttccctagttttc
aattacattcaagtttgaaagatatgtgcgtttgtgtgccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCAAATTTTCTACTCTAACG 494 429 2760 Antisense
GATCCAAAATGGCGTGAACTTCAAC 84 415 2811 Antisense
GGACAAGGATCATCGGATTCTCAAC 594 525 2877 Antisense
TCAATTGTCCTTTCGAGGATCGCCC 368 633 2955 Antisense
TCGCCCCACATTTCTTTCATGTGAA 656 599 2974 Antisense
GAACTATCTCTGTTTTATATCCACA 75 351 2996 Antisense
ATATCCACAGAAGTTATCCCATTTT 419 21 3012 Antisense
TTATCCCATTTTACTTTCATTCGAA 284 681 3025 Antisense
AAACCACACTTTTTCTATCATAAAT 178 125 3216 Antisense
TTTCCCTAGTTTTCAATTACATTCA 601 669 3286 Antisense
AAGATATGTGCGTTTGTGTGCCAAA 527 155 3318 Antisense
Sequence Source GenBank