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[172019_x_at]

Description g8515822 /REP_DB=GenBank Identifier /GB=AF269694.1 /PROTEIN_GB=AAF76193.1 /CHR=3 /FEA=Mapped Transcript /DEF=LIN-9S
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 23      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 409.9
(-1.3)
P 		435.1
(0.3)
P 		384.9
(-3)
P 		475.7
(3)
P 		91
B 445.2
(1.3)
P 		382.8
(-3)
P 		469
(3)
P 		420.7
(-0.4)
P 		86
C 507.9
(3)
P 		379.9
(-1.2)
P 		326.4
(-3)
P 		405.6
(-0.4)
P 		182
avr 454.3
(3) 		399.3
(-2.4) 		393.4
(-3) 		434
(1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 405.1
(-0.4)
P 		335
(-1.6)
P 		340.7
(-1.5)
P 		252.7
(-3)
P 		467.3
(0.7)
P 		600
(3)
P 		347
B 308.6
(-2.3)
P 		365.5
(-1.6)
P 		248.5
(-3)
P 		406.8
(-1.1)
P 		374.4
(-1.5)
P 		745.6
(3)
P 		497
C 335.7
(-1.9)
P 		443.4
(-0.4)
P 		258.2
(-3)
P 		320.7
(-2.1)
P 		368.5
(-1.4)
P 		683.1
(3)
P 		425
avr 349.8
(-2) 		381.3
(-1.5) 		282.5
(-3) 		326.7
(-2.3) 		403.4
(-1.2) 		676.2
(3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 149.3
(3)
P 		94.4
(-1.1)
P 		100.6
(-0.7)
P 		69.6
(-3)
P 		80
B 142
(3)
P 		94.5
(-2.4)
P 		108.7
(-0.8)
P 		89.6
(-3)
P 		52
C 168.1
(3)
P 		109.2
(-0.5)
P 		113.8
(-0.3)
P 		68.4
(-3)
P 		100
avr 153.1
(3) 		99.4
(-1.2) 		107.7
(-0.5) 		75.9
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 74.7
(-2.2)
P 		119.1
(1)
P 		74.2
(-2.3)
P 		64.1
(-3)
P 		141
(2.6)
P 		146.1
(3)
P 		82
B 107.4
(-1.7)
P 		121.7
(-1.3)
P 		60.3
(-3)
P 		107.7
(-1.7)
P 		152.1
(-0.5)
P 		278
(3)
P 		218
C 124.4
(-0.8)
P 		135.3
(-0.4)
P 		65.7
(-3)
P 		64.5
(-3)
P 		119.3
(-1)
P 		228.7
(3)
P 		164
avr 102.2
(-1.6) 		125.4
(-0.7) 		66.7
(-3) 		78.8
(-2.5) 		137.5
(-0.2) 		217.6
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172019_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19774
Sequence Type Exemplar sequence
Representative Public ID 8515822 NCBI
Target Description g8515822 /REP_DB=GenBank Identifier /GB=AF269694.1 /PROTEIN_GB=AAF76193.1 /CHR=3 /FEA=Mapped Transcript /DEF=LIN-9S
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027845(11), NM_001027844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027845 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-9) (lin-9) mRNA, complete cds. 11/11 None
NM_001027844 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-9) (lin-9) mRNA, complete cds. 11/11 None
ZK637.7b ENSEMBL cdna:known chromosome:CEL140:III:8900139:8904033:-1 gene:ZK637.7 11/11 A 
ZK637.7a ENSEMBL cdna:known chromosome:CEL140:III:8900139:8904033:-1 gene:ZK637.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013229 3/11 Cross Hyb Matching Probes None
SNAP00000013205 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8900134-8904031(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK637.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42391 Hypothetical protein ZK637.7b [Caenorhabditis elegans] ref|NP_001023016.1| abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] gb|AAF76192.1| LIN-9L [Caenorhabditis elegans] sp|P30630|LIN9_CAEEL Abnormal cell lineage protein 9 (Lin-9 protein) 0.0
blast CAA77454 Hypothetical protein ZK637.7a [Caenorhabditis elegans] ref|NP_001023015.1| abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] gb|AAF76193.1| LIN-9S [Caenorhabditis elegans] 0.0
blast S15794 lin-9 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010561 EMBL-EBI DIRP 3.9E-72
Pfam IPR010561 EMBL-EBI DIRP 3.9E-72
Sequence
Target Sequence 
>C. ELEGANS:172019_X_AT
gacagctgtccttttacaggttcgcacaatgggaactcaaaagatctctgcagttgatct
tcaatcacttggtgacgccatatctgaaattcggaccgctattcacccccgcaacgtggc
attcttccaagactacgttgaagttcatatgaaacaatttcacacaattatgctcgaaag
tggagcactagctggaactgtatcgaacagaaaataactaaaagcgtctcattttgtcca
aaaaaacgccaaccggtcccgtcagtttttgtttttctgaatattctcagttctctcatc
tctgctctctctctctccccaccttcttcaatcactttgtgtcttttcaaaattgtaccc
gatcatgagacacatccccatttttcttattttttaaaagtagttcaaccttgataattc
gaatgtgccaaaattctattttcttcctcattgtcatcatcatcatcatcagttttcgag
aaaaacgagccaaataacgaaacccttgtcagttatactccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGCTGTCCTTTTACAGGTTCGC 250 369 1733 Antisense
AATCACTTGGTGACGCCATATCTGA 263 171 1795 Antisense
CTGAAATTCGGACCGCTATTCACCC 683 235 1816 Antisense
CGCAACGTGGCATTCTTCCAAGACT 17 255 1842 Antisense
GGAGCACTAGCTGGAACTGTATCGA 155 521 1914 Antisense
TGAATATTCTCAGTTCTCTCATCTC 196 577 2010 Antisense
CCCACCTTCTTCAATCACTTTGTGT 370 259 2050 Antisense
TCATGAGACACATCCCCATTTTTCT 532 621 2095 Antisense
AAATTCTATTTTCTTCCTCATTGTC 238 115 2163 Antisense
GTCATCATCATCATCATCAGTTTTC 151 467 2185 Antisense
GAAACCCTTGTCAGTTATACTCCAC 245 357 2231 Antisense
Sequence Source GenBank