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[172017_x_at]

Description g9937513 /REP_DB=GenBank Identifier /GB=AF293972.1 /PROTEIN_GB=AAG02478.1 /CHR=5 /FEA=Mapped Transcript /DEF=auxilin
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 73      6grp_total > 39      4grp_total > 62      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 539.5
(3)
P 		440
(-1.8)
P 		525.5
(2.3)
P 		415
(-3)
P 		125
B 505.6
(3)
P 		494.2
(2.4)
P 		475.9
(1.4)
P 		397
(-3)
P 		109
C 667.4
(3)
P 		480.1
(-0.6)
P 		571.5
(1.2)
P 		354.4
(-3)
P 		313
avr 570.8
(3) 		471.4
(-0.3) 		524.3
(1.5) 		388.8
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 505.4
(-0.5)
P 		551.8
(0.5)
P 		389
(-3)
P 		445.7
(-1.8)
P 		669.5
(3)
P 		592.3
(1.3)
P 		281
B 598.3
(-1.7)
P 		756.4
(3)
P 		552.7
(-3)
P 		564.9
(-2.6)
P 		593.9
(-1.8)
P 		670.2
(0.5)
P 		204
C 742.9
(3)
P 		602.5
(-0.7)
P 		516.3
(-3)
P 		522.2
(-2.8)
P 		584.9
(-1.2)
P 		543.4
(-2.3)
P 		227
avr 615.5
(2.1) 		636.9
(3) 		486
(-3) 		510.9
(-2) 		616.1
(2.2) 		602
(1.6) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 196.4
(3)
P 		95.5
(-1.5)
P 		137.4
(0.4)
P 		60.7
(-3)
P 		136
B 161.2
(3)
P 		122
(-0.1)
P 		110.3
(-1)
P 		84.6
(-3)
P 		77
C 220.9
(3)
P 		138
(-0.1)
P 		199.2
(2.2)
P 		59.8
(-3)
P 		161
avr 192.8
(3) 		118.5
(-0.6) 		149
(0.9) 		68.4
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 93.2
(-2.6)
P 		196.3
(2.7)
P 		84.7
(-3)
P 		113
(-1.6)
P 		202
(3)
P 		144.2
(0)
P 		117
B 208.2
(0.8)
P 		251.8
(3)
P 		134.2
(-3)
P 		149.6
(-2.2)
P 		241.3
(2.5)
P 		249.9
(2.9)
P 		118
C 275.4
(3)
P 		183.9
(-0.2)
P 		131.4
(-2.1)
P 		105
(-3)
P 		189.3
(-0)
P 		181.9
(-0.3)
P 		170
avr 192.3
(1.8) 		210.7
(3) 		116.8
(-3) 		122.5
(-2.6) 		210.9
(3) 		192
(1.8) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172017_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19939
Sequence Type Exemplar sequence
Representative Public ID 9937513 NCBI
Target Description g9937513 /REP_DB=GenBank Identifier /GB=AF293972.1 /PROTEIN_GB=AAG02478.1 /CHR=5 /FEA=Mapped Transcript /DEF=auxilin
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075601 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-25) (dnj-25) mRNA, complete cds. 11/11 A 
W07A8.3.1 ENSEMBL cdna:known chromosome:CEL140:V:20728000:20742390:-1 gene:W07A8.3 11/11 A 
W07A8.3.2 ENSEMBL cdna:known chromosome:CEL140:V:20728010:20742391:-1 gene:W07A8.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017803 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017810 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20727999-20742392(-) 98.96 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dnj-25
Ensembl W07A8.3
Entrez Gene 180356 Entrez gene
SwissProt O62397 EMBL-EBI
WormBase CE27221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04929 Hypothetical protein W07A8.3 [Caenorhabditis elegans] ref|NP_508002.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-25) [Caenorhabditis elegans] gb|AAG02478.1| auxilin [Caenorhabditis elegans] 0.0
blast CAE61644 Hypothetical protein CBG05578 [Caenorhabditis briggsae] 0.0
blast XP_424873 PREDICTED: similar to Cyclin G-associated kinase [Gallus gallus] 6.0E-35
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 0.0
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.2E-9
Sequence
Target Sequence 
>C. ELEGANS:172017_X_AT
gagcgtaatattcgtgctcttctcggctcacttcataatgtcctttgggagggagctgat
cgatggaatcagccatcgatgggtgatcttttgacacctgatcagatcaagaaacattac
cgcaaggcatgtcttgtggtacatccagacaaattgacaggatctcctcatctctcattg
gccaaaatggcgttcacggagcttaacgatgcctatagcaaatatcagaatgacccggcg
gcgatgtagaataattgatttttttaaaaattaaatacacactttccccctttaaaattg
agatttttcatatgattatatcattttttccccgttcattttattcacctataccatact
tttctagtctaaaaatgacctttccccgcaaaaaaacccttgaaaattccacgctttttc
actgtgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGTAATATTCGTGCTCTTCTCG 527 385 2141 Antisense
TTCTCGGCTCACTTCATAATGTCCT 631 691 2160 Antisense
AGGCATGTCTTGTGGTACATCCAGA 61 53 2265 Antisense
AATTGACAGGATCTCCTCATCTCTC 701 177 2292 Antisense
TCCTCATCTCTCATTGGCCAAAATG 293 593 2305 Antisense
GTTCACGGAGCTTAACGATGCCTAT 140 445 2332 Antisense
AATATCAGAATGACCCGGCGGCGAT 611 173 2361 Antisense
TGATTATATCATTTTTTCCCCGTTC 57 563 2453 Antisense
CCGTTCATTTTATTCACCTATACCA 604 263 2472 Antisense
ACCTATACCATACTTTTCTAGTCTA 314 85 2487 Antisense
AATTCCACGCTTTTTCACTGTGATT 54 179 2545 Antisense
Sequence Source GenBank