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[172015_x_at]

Description AV176452_rc /REP_DB=TREMBL Accession /GB=AV176452 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk513e12 : 3prime end, single read.
Cluster 6grp_total > 68      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 25.6
(2.5)
P 		27.3
(3)
A 		5.2
(-3)
A 		12.3
(-1.1)
A 		22
B 24.2
(-0.6)
P 		4
(-3)
A 		14.5
(-1.8)
A 		55
(3)
A 		51
C 58.4
(3)
A 		39.1
(0.9)
P 		3.2
(-3)
A 		47
(1.8)
A 		55
avr 36.1
(2.6) 		23.5
(0.1) 		7.6
(-3) 		38.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 61.6
(-1.7)
P 		39.6
(-2.4)
M 		18.8
(-3)
A 		18.1
(-3)
A 		45.1
(-2.2)
P 		225.4
(3)
P 		207
B 63.4
(-1.9)
P 		31.9
(-2.7)
A 		30.7
(-2.8)
P 		22.1
(-3)
A 		50.9
(-2.2)
P 		240.9
(3)
P 		219
C 44
(-2.5)
P 		19
(-3)
A 		20.5
(-2.9)
A 		17.2
(-3)
A 		23
(-2.9)
P 		328.4
(3)
P 		311
avr 56.3
(-2.1) 		30.2
(-2.7) 		23.3
(-2.9) 		19.1
(-3) 		39.7
(-2.5) 		264.9
(3) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.3
(3)
P 		5.9
(0.5)
A 		1.3
(-3)
A 		1.8
(-2.6)
A 		8
B 7.7
(0.8)
P 		1
(-3)
A 		3.4
(-1.7)
A 		11.7
(3)
A 		11
C 19.3
(3)
A 		11.2
(0.3)
P 		1.1
(-3)
A 		7.9
(-0.8)
A 		18
avr 12.1
(3) 		6
(-0.6) 		1.9
(-3) 		7.1
(0.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 11.4
(-2.1)
P 		14.1
(-1.8)
M 		4.1
(-3)
A 		4.6
(-2.9)
A 		13.6
(-1.9)
P 		54.9
(3)
P 		51
B 22
(-1.8)
P 		10.6
(-2.7)
A 		7.5
(-2.9)
P 		5.8
(-3)
A 		20.7
(-1.9)
P 		89.8
(3)
P 		84
C 16.3
(-2.3)
P 		5.8
(-2.9)
A 		5.2
(-2.9)
A 		3.5
(-3)
A 		7.5
(-2.8)
P 		109.9
(3)
P 		106
avr 16.6
(-2.1) 		10.2
(-2.6) 		5.6
(-2.9) 		4.6
(-3) 		13.9
(-2.3) 		84.9
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172015_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28033
Sequence Type Exemplar sequence
Representative Public ID AV176452 NCBI
Target Description AV176452_rc /REP_DB=TREMBL Accession /GB=AV176452 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk513e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027792(11), NM_001027791(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027792 NCBI Caenorhabditis elegans Y82E9BR.17b (Y82E9BR.17) mRNA, complete cds. 11/11 None
NM_001027791 NCBI Caenorhabditis elegans Y82E9BR.17a (Y82E9BR.17) mRNA, complete cds. 10/11 None
GENEFINDER00000008926 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1447596:1455747:-1 10/11 None
Y82E9BR.17b ENSEMBL cdna:known chromosome:CEL140:III:1447545:1450692:-1 gene:Y82E9BR.17 11/11 None
Y82E9BR.17a ENSEMBL cdna:known chromosome:CEL140:III:1447596:1455750:-1 gene:Y82E9BR.17 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008918 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1447572-1450215(-) 91.46 91.46
Public Domain and Genome References
Ensembl Y82E9BR.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK26159 Hypothetical protein Y82E9BR.17a [Caenorhabditis elegans] ref|NP_001022962.1| Y82E9BR.17a [Caenorhabditis elegans] 0.0
blast AAK26159 Hypothetical protein Y82E9BR.17a [Caenorhabditis elegans] ref|NP_001022962.1| Y82E9BR.17a [Caenorhabditis elegans] 1.0E-103
blast AAP46263 Hypothetical protein Y82E9BR.17b [Caenorhabditis elegans] ref|NP_001022963.1| Y82E9BR.17b [Caenorhabditis elegans] 1.0E-103
blast AAP46263 Hypothetical protein Y82E9BR.17b [Caenorhabditis elegans] ref|NP_001022963.1| Y82E9BR.17b [Caenorhabditis elegans] 1.0E-102
blast AAP46263 Hypothetical protein Y82E9BR.17b [Caenorhabditis elegans] ref|NP_001022963.1| Y82E9BR.17b [Caenorhabditis elegans] 9.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022963.1 1 36-58
Y82E9BR.17b 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:172015_X_AT
aatgggatttgcgtagaacagttcaaaatgnnnnncgggtgtgtcattgataaagaaggt
ttggaacaagcaaaagataacggattccaaattgtatgtactaaatgcgcgttcaagtgc
atcacagttacatnnnnnnnnnnnnnnnnnnnnnnnaaacatgccgattgggacaatgat
caaaagccacttccaatcgaagattttgcaattgtggatgatatattcgagtcgtcgttt
gaaataatttaagaaactatacaactgacgaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGGATTTGCGTAGAACAGTTCA 553 163 38 Antisense
AACGGATTCCAAATTGTATGTACTA 14 143 116 Antisense
TGTATGTACTAAATGCGCGTTCAAG 629 559 130 Antisense
GCGCGTTCAAGTGCATCACAGTTAC 339 287 144 Antisense
AAACATGCCGATTGGGACAATGATC 315 127 194 Antisense
GACAATGATCAAAAGCCACTTCCAA 280 365 209 Antisense
AAAAGCCACTTCCAATCGAAGATTT 190 129 219 Antisense
GAAGATTTTGCAATTGTGGATGATA 650 337 236 Antisense
GTGGATGATATATTCGAGTCGTCGT 301 489 251 Antisense
TCGAGTCGTCGTTTGAAATAATTTA 82 599 264 Antisense
TTTAAGAAACTATACAACTGACGAA 395 551 285 Antisense
Sequence Source Affymetrix Proprietary Database