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[172012_x_at]

Description AV183562_rc /REP_DB=TREMBL Accession /GB=AV183562 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 361.2
(3)
P 		212.9
(-1)
P 		185.2
(-1.8)
P 		139.6
(-3)
P 		222
B 323.9
(3)
P 		235
(-1.9)
P 		216.1
(-3)
P 		236.2
(-1.9)
P 		108
C 338.7
(3)
P 		153.9
(-3)
P 		164.9
(-2.6)
P 		195.3
(-1.7)
P 		185
avr 341.3
(3) 		200.6
(-2.5) 		188.7
(-3) 		190.4
(-2.9) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 516.3
(3)
P 		210.3
(-2.6)
P 		283
(-1.3)
P 		191.3
(-2.9)
P 		245.3
(-1.9)
P 		187.2
(-3)
P 		329
B 468.6
(3)
P 		381.9
(0.9)
P 		237.8
(-2.7)
P 		244.6
(-2.5)
P 		224.3
(-3)
P 		225.4
(-3)
P 		244
C 332.9
(2.7)
P 		343.3
(3)
P 		258.5
(0.5)
P 		228.7
(-0.4)
P 		142.2
(-3)
P 		220.1
(-0.7)
P 		201
avr 439.3
(3) 		311.8
(-0.2) 		259.8
(-1.6) 		221.5
(-2.6) 		203.9
(-3) 		210.9
(-2.8) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 131.5
(3)
P 		46.2
(-1.6)
P 		48.4
(-1.5)
P 		20.4
(-3)
P 		111
B 103.3
(3)
P 		58
(-2.1)
P 		50.1
(-3)
P 		50.3
(-3)
P 		53
C 112.1
(3)
P 		44.3
(-2.1)
P 		57.5
(-1.1)
P 		32.9
(-3)
P 		79
avr 115.6
(3) 		49.5
(-1.9) 		52
(-1.7) 		34.5
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 95.2
(3)
P 		74.8
(0.5)
P 		61.6
(-1.1)
P 		48.5
(-2.6)
P 		74
(0.4)
P 		45.6
(-3)
P 		50
B 163
(3)
P 		127.1
(1)
P 		57.8
(-3)
P 		64.8
(-2.6)
P 		91.1
(-1.1)
P 		84.1
(-1.5)
P 		105
C 123.4
(3)
P 		104.7
(1.6)
P 		65.8
(-1.5)
P 		46
(-3)
P 		46
(-3)
P 		73.7
(-0.9)
P 		77
avr 127.2
(3) 		102.2
(1) 		61.7
(-2.3) 		53.1
(-3) 		70.4
(-1.6) 		67.8
(-1.8) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172012_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27995
Sequence Type Exemplar sequence
Representative Public ID AV183562 NCBI
Target Description AV183562_rc /REP_DB=TREMBL Accession /GB=AV183562 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076598
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R07E4.6a ENSEMBL cdna:known chromosome:CEL140:X:5970607:5977943:-1 gene:R07E4.6 None
NM_076598 NCBI Caenorhabditis elegans protein KINase family member (kin-2) (kin-2) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5970698-5970958(-) 67.75 67.75
Public Domain and Genome References
Ensembl R07E4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508999 protein KINase family member (kin-2) [Caenorhabditis elegans] gb|AAA80405.1| Protein kinase protein 2, isoform a [Caenorhabditis elegans] sp|P30625|KAPR_CAEEL cAMP-dependent protein kinase regulatory subunit 0.0
blast AAA27980 cAMP-dependent protein kinase subunit R 0.0
blast NP_001024842 protein KINase family member (kin-2) [Caenorhabditis elegans] gb|AAK82909.1| Protein kinase protein 2, isoform b [Caenorhabditis elegans] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR003117 EMBL-EBI cAMP-dependent protein kinase regulator, type II PKA R subunit 4.5E-17
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.0E-30
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:172012_X_AT
tccacttctggattttgaactccgtcacccttatccagcattgcggagtctcttatctta
caacccttccctnaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnaaatccgctgtcatgtcgccatctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnattttccactagatttctgttatccaaac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTTCTGGATTTTGAACTCCGT 56 589 54 Antisense
TTCTGGATTTTGAACTCCGTCACCC 243 695 59 Antisense
TCACCCTTATCCAGCATTGCGGAGT 259 627 78 Antisense
ACCCTTATCCAGCATTGCGGAGTCT 9 91 80 Antisense
CCTTATCCAGCATTGCGGAGTCTCT 465 269 82 Antisense
TATCCAGCATTGCGGAGTCTCTTAT 139 659 85 Antisense
CCAGCATTGCGGAGTCTCTTATCTT 415 271 88 Antisense
CATTGCGGAGTCTCTTATCTTACAA 344 217 92 Antisense
TTGCGGAGTCTCTTATCTTACAACC 101 703 94 Antisense
ATTTTCCACTAGATTTCTGTTATCC 552 13 243 Antisense
TCCACTAGATTTCTGTTATCCAAAC 550 587 247 Antisense
Sequence Source Affymetrix Proprietary Database