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[172010_x_at]

Description AV185026_rc /REP_DB=TREMBL Accession /GB=AV185026 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk672f12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 23      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 47      6grp_total > 03      4grp_total > 60      6grp_cgc > 51      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2214
1 2 3 4 range
A 3696.6
(3)
P 		3315
(1.8)
P 		3504.3
(2.4)
P 		1716.3
(-3)
P 		1980
B 2877.4
(-0.4)
P 		3313.1
(3)
P 		3051.4
(1)
P 		2543
(-3)
P 		770
C 3552.5
(1.7)
P 		3930.6
(3)
P 		3646
(2)
P 		2233.2
(-3)
P 		1697
avr 3375.5
(2.4) 		3519.6
(3) 		3400.6
(2.5) 		2164.2
(-3) 		1355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1186
1 2 3 4 5 6 range
A 2793
(-2.7)
P 		3412.4
(1.5)
P 		3630.4
(3)
P 		3378.9
(1.3)
P 		3047.5
(-0.9)
P 		2744.1
(-3)
P 		886
B 3886
(3)
P 		3543
(1.2)
P 		2740.2
(-3)
P 		3181.2
(-0.7)
P 		3421.4
(0.6)
P 		2982.1
(-1.7)
P 		1146
C 3537.5
(1.6)
P 		3721
(2.6)
P 		3705.3
(2.5)
P 		3801.8
(3)
P 		3103.6
(-0.8)
P 		2700.4
(-3)
P 		1101
avr 3405.5
(1.8) 		3558.8
(3) 		3358.6
(1.4) 		3454
(2.2) 		3190.8
(0.1) 		2808.9
(-3) 		750
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1095
1 2 3 4 range
A 1345.9
(3)
P 		719.6
(-0.4)
P 		916.1
(0.6)
P 		251.2
(-3)
P 		1095
B 917.6
(3)
P 		818.2
(1.4)
P 		707.1
(-0.4)
P 		541.9
(-3)
P 		376
C 1176
(2.4)
P 		1130.1
(2.1)
P 		1270.7
(3)
P 		376.6
(-3)
P 		894
avr 1146.5
(3) 		889.3
(1) 		964.6
(1.6) 		389.9
(-3) 		757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 875
1 2 3 4 5 6 range
A 514.9
(-3)
P 		1213.6
(3)
P 		790.6
(-0.6)
P 		857
(-0.1)
P 		919.6
(0.5)
P 		668.1
(-1.7)
P 		699
B 1352.1
(2.7)
P 		1179.3
(1.3)
P 		665.4
(-3)
P 		842.6
(-1.5)
P 		1390.1
(3)
P 		1112
(0.7)
P 		725
C 1311.2
(3)
P 		1135.4
(1.1)
P 		943.1
(-1)
P 		764.5
(-3)
P 		1004.3
(-0.4)
P 		904
(-1.5)
P 		547
avr 1059.4
(1.1) 		1176.1
(3) 		799.7
(-3) 		821.4
(-2.7) 		1104.7
(1.9) 		894.7
(-1.5) 		376
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172010_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27986
Sequence Type Exemplar sequence
Representative Public ID AV185026 NCBI
Target Description AV185026_rc /REP_DB=TREMBL Accession /GB=AV185026 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk672f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068744 NCBI Caenorhabditis elegans CAP-z protein family member (cap-1) (cap-1) mRNA, complete cds. 11/11 A 
D2024.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:7228401:7230207:-1 gene:D2024.6 11/11 None
D2024.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:7228451:7230209:-1 gene:D2024.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033323 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033339 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7228473-7229116(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cap-1
Ensembl D2024.6
Entrez Gene 177497 Entrez gene
SwissProt P34685 EMBL-EBI
WormBase CE04295 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604149_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE:1587660_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE_2:CFA.20167.1.S1_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE_2:CFA.886.1.S1_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
CANINE_2:CFAAFFX.20828.1.S1_S_AT similar to capping protein (actin filament) muscle Z-line, alpha 1 cfa
DROSOPHILA_2:1625110_AT dm
DROSGENOME1:152284_AT dm
CHICKEN:GGA.2783.1.S1_AT capping protein (actin filament) muscle Z-line, alpha 1 gga
CHICKEN:GGAAFFX.11794.1.S1_S_AT capping protein (actin filament) muscle Z-line, alpha 1 gga
HG-U133_PLUS_2:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-FOCUS:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:208374_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HU35KSUBC:RC_W92769_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HUGENEFL:U56637_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:G5453596_3P_A_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.247811.0.S1_3P_S_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.247811.0.S1_3P_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:217392_3P_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:217392_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:217392_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:217392_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95AV2:40910_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95D:74743_F_AT capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.303289.0.S1_3P_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.303289.0.S1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:216123_3P_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:216123_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:216123_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:216123_X_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:216124_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:216124_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:216124_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A_2:222300_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:222300_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133A:222300_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:238407_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133B:238407_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:238512_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133B:238512_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133_PLUS_2:241275_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U133B:241275_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95B:47394_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95B:58100_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HG-U95E:77150_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HU35KSUBD:RC_AA410292_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
HU35KSUBC:RC_AA343041_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.146200.0.A1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.146200.0.S1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.283489.0.A1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
U133_X3P:HS.61656.0.A1_3P_AT Capping protein (actin filament) muscle Z-line, alpha 1 hs
MOE430A:1452038_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430_2:1452038_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430A_2:1452038_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MU11KSUBA:U16740_S_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MG-U74AV2:93499_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOE430A:1439455_X_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430A_2:1439455_X_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOUSE430_2:1439455_X_AT capping protein (actin filament) muscle Z-line, alpha 1 mm
MOE430B:1440380_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
MOUSE430_2:1440380_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
MG-U74CV2:134266_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
MU11KSUBB:MSA.19664.0_S_AT Capping protein (actin filament) muscle Z-line, alpha 1, mRNA (cDNA clone MGC:28790 IMAGE:4489604) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30036 actin cytoskeleton organization and biogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8290 F-actin capping protein complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79305 capping protein alpha subunit [Caenorhabditis elegans] emb|CAA79269.1| capping protein alpha subunit [Caenorhabditis elegans] ref|NP_501145.1| CAP-z protein family member (cap-1) [Caenorhabditis elegans] gb|AAA82286.1| Cap-z protein protein 1 [Caenorhabditis elegans] sp|P34685|CAPZA_CAEEL F-actin capping protein alpha subunit 1.0E-163
blast CAE61839 Hypothetical protein CBG05812 [Caenorhabditis briggsae] 1.0E-155
blast XP_624862 PREDICTED: similar to F-actin capping protein alpha subunit [Apis mellifera] 6.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002189 EMBL-EBI F-actin capping protein, alpha subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172010_X_AT
caattgccagttactcgcgctaagatggactggaataaggctcaaacctaccgaattggt
caggaaatgaagtaatcacaaaatcgttatcacatcgctttgcttcaagttcgtctgctg
gtcttcatcatcttcctaatcctcnnnnnnnnnnnnnnnnnnnnnnnnnnncgnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnccggacactagacgtgctttacaacataatacc
cttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGCCAGTTACTCGCGCTAAGA 121 181 21 Antisense
GTTACTCGCGCTAAGATGGACTGGA 596 445 30 Antisense
GATGGACTGGAATAAGGCTCAAACC 172 405 44 Antisense
GGCTCAAACCTACCGAATTGGTCAG 542 537 59 Antisense
GAAGTAATCACAAAATCGTTATCAC 247 337 89 Antisense
TCACAAAATCGTTATCACATCGCTT 98 629 96 Antisense
ATCACATCGCTTTGCTTCAAGTTCG 363 27 109 Antisense
ACATCGCTTTGCTTCAAGTTCGTCT 151 107 112 Antisense
CCGGACACTAGACGTGCTTTACAAC 694 265 228 Antisense
ACACTAGACGTGCTTTACAACATAA 323 109 232 Antisense
CGTGCTTTACAACATAATACCCTTC 317 243 240 Antisense
Sequence Source Affymetrix Proprietary Database